New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 416085219 (0.450)5 (0.130) 5/244 NT 21.8% coding (1205/1302 nt) PP_3663 GGDEF domain‑containing protein
?NC_002947 = 4160875 18 (0.450)coding (1182/1302 nt) PP_3663 GGDEF domain‑containing protein

CACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4160714‑4160852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatca‑‑GCCGCCGGCGAGCCTGGCGGCGTTGATCGAGC  <  NC_002947/4160875‑4160844
                                                                                                                                                                             
CACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATC                                     <  5:108538/138‑1
CACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATC                                     >  6:108538/1‑138
               AAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCGGCGAGCCTGGCGGCGT           <  2:84734/149‑1
                      CCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCAACGCCGCCGGCGAGCCTGGCGGCGTTGATC      <  1:55128/147‑1
                                                 GGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCA‑‑GCCGCCGGCGAGCCTGGCGGCGTTGA        <  8:76459/116‑1
                                                     TTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCA‑‑GCCGCCGGCGAGCCTGGCGGCGTTGATCGAGC  >  7:190672/1‑118
                                                     TTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCA‑‑GCCGCCGGCGAGCCTGGCGGCGTTGATCGAGC  <  8:190672/118‑1
                                                                                                                                                                             
CACATGGGTTACATGAAAGCTCCCCCACCTAGGTGACTCGCTCACTGCCGGAGTTCAACCACCGCCCGCTCGAAAAACCGAATGCTGTCGCGCCCCCCACGTTTGGACTGGTACAACGCCACATCCCCCTGCTCGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4160714‑4160852
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcgatca‑‑GCCGCCGGCGAGCCTGGCGGCGTTGATCGAGC  <  NC_002947/4160875‑4160844

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.