New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4266523 =	43 (1.020)	4 (0.100)	4/244	NT	9.1%	intergenic (‑65/+81)	PP_3738/galP‑IV	transcriptional regulator VanR/porin‑like protein
	?	NC_002947	4266610 =	39 (0.980)					coding (1248/1254 nt)	galP‑IV	porin‑like protein

ACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4266675‑4266523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCCA  >  NC_002947/4266610‑4266753                                                                                                                                                                                                                                                                                                           ACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCT                                                                                                                                                      <  3:62121/149‑1   CAACCGGCGCAGCTTCAACAGAGATCTCGACCAGACGCGCCTGATCGTCAGCTAACCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTA                                                                                                                                                     >  7:225380/1‑148                                                                               GTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGATGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGT                                                                        >  5:242457/1‑149                                                                                    CCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGC                                                                   >  1:216983/1‑149                                                                                     CCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCC                                                                  >  2:202635/1‑149                                                                                       GCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAAGGTCAGCGGATAGCTGATGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGG                                                                <  6:242457/149‑1                                                                                                                                                    CTACAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCC    >  5:83549/1‑148                                                                                                                                                       CAAGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCCA  <  7:83433/147‑1                                                                                                                                                                                                                                                                                                           ACCAACCGGCGCAGCTTCAACAGTGATCTCGACCAGACGCGCCTGATCGTCAGCTATCCGCTGACCTTGTAGGGGCGGGTTCACCCGCGAACACCGGCGCAGCCGGTGCCATGTTCCGCGTTGCCTGCTTCGCGGGTGAACCCGCTCCTACAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4266675‑4266523 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cctacaaGGTCAGCGGATAGCTGACGATCAGGCGCGTCTGGTCGAGATCACTGTTGAAGCTGCGCCGGTTGGTCGCGTTGTTCAGCCGGATGTTGAGGTTCTTCAAAGCCCCGCTCTGGAAGGTGTAGTTCACCTCGGCATCGCGCTCCCA  >  NC_002947/4266610‑4266753

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.