New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4474178 =	58 (1.370)	3 (0.070)	3/246	NT	5.6%	coding (1358/1536 nt)	PP_3964	transposase
	?	NC_002947	4474231 =	45 (1.120)					coding (1305/1536 nt)	PP_3964	transposase

AATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGATGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4474326‑4474178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggttGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATC  >  NC_002947/4474231‑4474378                                                                                                                                                                                                                                                                                                           AATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGATGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGT                                                                                                                                                       >  4:69263/1‑148                                                          ACGCGCTACCTGGATGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGG                                                                                                                                                        <  3:236404/90‑1                                                          ACGCGCTACCTGGATGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGG                                                                                                                                                        >  4:236404/1‑90                                                                                            ACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTG                                                                 >  3:14783/1‑143                                                                                            ACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTG                                                                 <  4:14783/143‑1                                                                                                CAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCAT                                                       >  4:17623/1‑149                                                                                                                                                CTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGA       <  1:249590/149‑1                                                                                                                                                CTGGTTGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGA       <  6:196930/149‑1                                                                                                                                                     TGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATC  >  5:6270/1‑149                                                                                                                                                                                                                                                                                                           AATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAACGCTGGGTAGCGCTGACGCGCTACCTGGATGATGGGGCTGTGCCCATCGACAACAACCAGGTCGAAAACCAGATACGGCCATGGGCACTCGGGCGCTCGAACTGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4474326‑4474178 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggttGTTGTCGATGGGCACAGCCCCATCATCCAGGTAGCGCGTCAGCGCTACCCAGCGTTTCAGGCTGTAATCGAGGGCTTTGGCCGTGGCTGATCCATTGGGCACCAGGTCTCGCTGAGCCAACATCCAGTCATGCAGTTTTTTGAGGATC  >  NC_002947/4474231‑4474378

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.