New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4808174 =	0 (0.000)	14 (0.460)	10/188	NT	51.9%	intergenic (‑283/‑272)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5988935	26 (0.850)					intergenic (+229/‑317)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

TCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808341‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAAC  <  NC_002947/5988935‑5988794                                                                                                                                                                                                                                                                                                                         TCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTTGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGC                                                                                                                                                                   >  2:8259/1‑149       TTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGC                                                                                                                                                             >  2:120071/1‑149             GGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGA‑GGGGCTGTGTGGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAAATCGAGCGCCGCCCGCGCGGCGCTT                                                                                                                                                      <  5:182132/149‑1                             ATTTTCGAGTGGCGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAAGTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGC                                                                                                                                       <  7:171058/149‑1                                                 TTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCggc                                                                                                                     >  4:104530/1‑144                                                             GGGGGCGGCGTTGTAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCgg                                                                                                                      <  1:135988/134‑3                                                               GGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGcac                                                                                                     >  7:216066/1‑145                                                                        TGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCG                                                                                           <  1:96433/149‑1                                                                                   GTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTG                                                                                >  4:23068/1‑149                                                                                    TGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGGCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGT                                                                               <  1:8259/149‑1                                                                                    TGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGT                                                                               <  1:120071/149‑1                                                                                     GGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCCATGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGCCCGCCTTGT                                                                               >  1:60117/1‑149                                                                                        CGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGT                                                                           <  3:23068/149‑1                                                                                         GGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTA                                                                          <  2:60117/149‑1                                                                                              TGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGT                                                                               >  8:247467/1‑139                                                                                              TGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGT                                                                               <  7:247467/139‑1                                                                                                                GCCGGAGGATTTTCAGCGCC‑GGTTAGCTCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTC‑GGCCAGTCCCTCCTGCACCAGTCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGACATGCc                                                    <  8:216066/148‑2                                                                                                                                  CC‑TGTGAGATTGGGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCG                                  >  7:64077/1‑149                                                                                                                                         AGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGATTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCC                             <  2:191966/148‑1                                                                                                                                           ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTC                                         >  8:157576/1‑134                                                                                                                                            TCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCA                           >  4:24111/1‑147                                                                                                                                              GAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG                        <  1:124560/148‑1                                                                                                                                              GAGCGCCGCCCGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAG                        <  4:15247/148‑1                                                                                                                                                        CGCGCGGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGC             <  3:24111/149‑1                                                                                                                                                             GGCGCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTATGGCCAATCCCTCCAGTGCCAGGCGCGCGCGACCGCCGTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGA         >  8:56030/1‑148                                                                                                                                                                GCTTCGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTACCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACA     <  8:124034/149‑1                                                                                                                                                                    CGCGGGTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAAC  <  8:64077/148‑1                                                                                                                                                                                                                                                                                                                         TCTGGGTTTGCAGGGTCTTTGTTGTTGGATTTTCGAGGGGAGGCGGCGTTGGAATTTTGAGGGGGCGGCGTTGGAATTTTGAGTGGACGGCGTTGGAATTTTGAGGTGTTTGCCGGAGGATTTTCAGCGCC‑TGTGAGATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4808341‑4808174 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgagatcgagcgccgcccgcgcggcgcttcgcgggTAAACCCGCTCCTACGTTTGTTTCTGGCCAATCCCTCCTGTGCCAGGCGCGCGCGACCGCCTTGTTTGTACGACGCGATATCGAGGCGTGCGCCAGGGGGCTCGCGTGCGCGTCCCACAGGAATAACTGGCCCGAAACAAAC  <  NC_002947/5988935‑5988794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.