New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5081914	38 (0.900)	4 (0.100)	4/252	NT	8.8%	coding (2352/2625 nt)	alaS	alanine‑‑tRNA ligase
	?	NC_002947	= 5081951	46 (1.120)					coding (2315/2625 nt)	alaS	alanine‑‑tRNA ligase

CGCCGGCCACCAGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081817‑5081914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCCCT  <  NC_002947/5081951‑5081912                                                                                                                                            CGCCGGCCACCAGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGGTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCCCT  <  1:6542/138‑1 CGCCGGCCACCAGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGGTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCCCT  >  2:6542/1‑138            AGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGGTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCC    >  1:200633/1‑125            AGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGGTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCC    <  2:200633/125‑1                                                                                                                                            CGCCGGCCACCAGCACAACCTTGCCCTCATGCTCGCTGCCCAGCAGGATCACTGCGTGGCCGAGCTTGTTCTTCAGCTGATCGACCAGGGCCAGCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/5081817‑5081914 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggTCCTCGCCGCCCGCCTGGATGGGCAGGATGGCAAGGCCCT  <  NC_002947/5081951‑5081912

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.