| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 5531499 | 36 (0.850) | 3 (0.080) | 3/244 | NT | 7.4% | coding (774/1308 nt) | braE | high‑affinity branched‑chain amino acid ABC transporter permease BraE |
| ? | NC_002947 | = 5531550 | 41 (1.030) | coding (723/1308 nt) | braE | high‑affinity branched‑chain amino acid ABC transporter permease BraE | |||||
GCGCAGCGCTTCCCAGGCCCGGCCGACCGGCATGCGAGTCAGGCGATGCTTGATGTACAGCACTGCCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5531346‑5531499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaccTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTACAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCAGTGCT < NC_002947/5531550‑5531404 GCGCAGCGCTACCCAGGCCCGGCCGACCGGCATGCGAGTCAGGCGATGCTTGATGTACAGCACTGCCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCG < 7:105206/149‑1 ACAGCACTGCCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGC > 5:59993/1‑95 ACAGCACTGCCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGC < 6:59993/95‑1 CCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGCACCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGAT > 3:63744/1‑149 CAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGCACCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGAT < 4:63744/148‑1 gaaCATGAACAGCACCGCGTAGATGAACACGAACTTGATGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGCACCTTCACACACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAG < 8:177276/146‑1 CGGCACCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTACAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCA < 4:171790/149‑1 GCACCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTCCAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCAGT > 7:101130/1‑149 CCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTACAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCAGTGCT > 5:270497/1‑149 CCTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTACAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCAGTGCT < 8:101130/149‑1 GCGCAGCGCTTCCCAGGCCCGGCCGACCGGCATGCGAGTCAGGCGATGCTTGATGTACAGCACTGCCAGCACGACCATGAACAGCACCGCGTAGATGAACACGAACTTGAGGCTGGCGTTGTACTCGAAGCCGAAGAACTCGTGGATCGGCACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/5531346‑5531499‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcaccTTCACCCACCTTCTTCGGCCTTGAGTTCGGCCGCCGGGCCAAGGATGGCGGGGTGCCGATCCACGAGTTCTTCGGCTTCGAGTACAACGCCAGCCTCAAGTTCGTGTTCATCTACGCGGTGCTGTTCATGGTCGTGCTGGCAGTGCT < NC_002947/5531550‑5531404 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |