New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 5611557 =56 (1.330)3 (0.080) 3/240 NT 5.3% coding (551/1176 nt) PP_4931 hypothetical protein
?NC_002947 5611609 = 56 (1.430)coding (603/1176 nt) PP_4931 hypothetical protein

GCCCTTGGCCATGACCATGTGCAGCGGGCGGGTTTGCATGGCCGGCTGATCCAGGCCCAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATACGATGCGTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5611711‑5611557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacgcatCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTACGCCCACTGCCTCGGCGGCGGGCC  >  NC_002947/5611609‑5611755
                                                                                                                                                                                                                                                                                                              
GCCCTTGGCCATGACCATGTGCAGCGGGCGGGTTTGCATGGCCGGCTGATCCAGGCCCAGCGCCTGCAGCAAGCCTACGGTGCCGGCTCAGGCGCTCAATACGATGCGTAGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACa                                                                                                                                                            >  7:111181/1‑147
      GGCCATGACCATGTGCAGCGGGCGGGTTTGCATGGCCGGCTGATCCAGGCCCAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATACGATGCGTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCA                                                                                                                                                      <  7:199786/148‑1
      GGCCATGACCATGTGCAGCGGGCGGGTTTGCATGGCCGGCTGATCCAGGCCCAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATACGATGCGTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGC                                                                                                                                                       <  6:41219/147‑1
                                                                                                      GATGCGTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGC                                                     >  3:47469/1‑149
                                                                                                           GTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGG                                                                                                >  1:138596/1‑101
                                                                                                           GTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGG                                                                                                <  2:138596/101‑1
                                                                                                                                                   CAACGCATCATATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGC                                                                  >  7:117135/1‑91
                                                                                                                                                   CAACGCATCATATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGC                                                                  <  8:117135/91‑1
                                                                                                                                                    AACGCATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTACGCCCACTGCCTCGGCGGC       >  1:112337/1‑149
                                                                                                                                                        CATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTACGCCCACTGCCTCGGCGGCGGGC   <  8:203150/149‑1
                                                                                                                                                        CATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTAC                         <  3:57573/127‑1
                                                                                                                                                        CATCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTAC                         >  4:57573/1‑127
                                                                                                                                                          TCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTACGCCCACTGCCTCGGCGGCGGGCC  >  6:1294/1‑148
                                                                                                                                                                                                                                                                                                              
GCCCTTGGCCATGACCATGTGCAGCGGGCGGGTTTGCATGGCCGGCTGATCCAGGCCCAGCGCCTGCAGCAAGCCTTCGGTGCCGGCTCCGGCGCTCAATACGATGCGTTGGGCACGGATTTCCCGGTCGTCCACGCGCAGGCCGACCAACGCAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5611711‑5611557
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccaacgcatCGTATTGAGCGCCGGAGCCGGCACCGAAGGCTTGCTGCAGGCGCTGGGCCTGGATCAGCCGGCCATGCAAACCCGCCCGCTGCACATGGTCATGGCCAAGGGCCCGAACCTCAAACCTTTGTACGCCCACTGCCTCGGCGGCGGGCC  >  NC_002947/5611609‑5611755

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.