| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5965001 = | 63 (1.490) | 4 (0.100) | 4/244 | NT | 6.1% | coding (195/696 nt) | had | (S)‑2‑haloacid dehalogenase |
| ? | NC_002947 | 5965077 = | 63 (1.580) | coding (271/696 nt) | had | (S)‑2‑haloacid dehalogenase | |||||
AAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5965151‑5965001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGG > NC_002947/5965077‑5965224 AAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGC > 3:72788/1‑149 GCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGT > 6:117224/1‑149 CCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTG > 6:11797/1‑149 CTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATA < 5:117224/149‑1 CCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGTTGCTTGAAATCTTGCGCCATCAATACATCCTGGGG < 5:11797/149‑1 GGCGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGG < 1:155863/149‑1 CGCTGGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGG < 3:117125/149‑1 GGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCATCCGGCTGGGGTTGG > 4:193013/1‑149 AAGCACCGGCTGCACCTCTGGGAAGATCTCCACCTGGTGGCGGGCATGCAGGAACACTTCGAAGCCTTCGTTGGCCAGCGCCTGTGCGTGCTGTTCGCTGTAGCCGACCTCTTCCAGGGCATGAAACAGCACGCGCCTGCGCAGGGCGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5965151‑5965001‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgctgGCCAACGAAGGCTTCGAAGTGTTCCTGCATGCCCGCCACCAGGTGGAGATCTTCCCAGAGGTGCAGCCGGTGCTTGAAATCTTGCGCCATCAATACATCCTGGGGGTGGTCACCAACGGCAATGCCGACGTCAGCCGGCTGGGGTTGG > NC_002947/5965077‑5965224 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |