New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5969631 =	54 (1.280)	3 (0.070)	3/250	NT	5.5%	coding (1663/2124 nt)	PP_5236	hypothetical protein
	?	NC_002947	5969699 =	50 (1.220)					coding (1595/2124 nt)	PP_5236	hypothetical protein

TACTGGCTGCAGCGTGCGGTGGAGGCGGGCAGCAGGCAGGCCAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5969781‑5969631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaTCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTGCAGCCAGTACCCGGCTGCCTCGTCATCCAGGTAATGCGCCGGGGTGTTGGCCAGGCCGCCATGGTGCAGCT  >  NC_002947/5969699‑5969843                                                                                                                                                                                                                                                                                                          TACTGGCTGCAGCGTGCGGTGGAGGCGGGCAGCAGGCAGGCCAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCA                                                                                                                                                     <  3:215538/149‑1   CTGGCTGCAGCGTGCGGTGGAGGCGGGCAGCAGGCAGGCCAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAG                                                                                                                                                    <  4:96180/148‑1                                          CAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCA                                                                                                                                                     >  7:173841/1‑108                                          CAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCA                                                                                                                                                     <  8:173841/108‑1                                                                              TGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAGATCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTG                                                                         >  3:167142/1‑148                                                                                 GGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAGATCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACATGGCCTGCCTGCTGCCCGCCACCACCGCACGCTGCAG                                                                      >  7:226144/1‑148                                                                                        AACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAGATCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTGCAGCCA                                                                   <  4:167142/144‑1                                                                                                                                                     AGATCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTGCAGCCAGTACCCGGCTGCCTCGTCATCCAGGTAATGCGCCGGGGTGTTGGCCAGGCCGCCATGGTGCAGCT  <  1:48420/148‑1                                                                                                                                                     AGATCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTGCAGCCAGTACCCGGCTGCCTCGTCATCCAGGTAATGCGCCGGGGTGTTGGCCAGGCCGCCATGGTGCAGCT  <  3:244717/148‑1                                                                                                                                                                                                                                                                                                          TACTGGCTGCAGCGTGCGGTGGAGGCGGGCAGCAGGCAGGCCAAGTACAACCTGGCCTGCCTGCGCATGGACGGCGATGAGGATCTGAACGAGCGCAGTGCCATGCTGGCGGTCAGGCGCCTGCTTGTCGACGCGCTGGGCAACGGGCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/5969781‑5969631 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagaTCCTCATCGCCGTCCATGCGCAGGCAGGCCAGGTTGTACTTGGCCTGCCTGCTGCCCGCCTCCACCGCACGCTGCAGCCAGTACCCGGCTGCCTCGTCATCCAGGTAATGCGCCGGGGTGTTGGCCAGGCCGCCATGGTGCAGCT  >  NC_002947/5969699‑5969843

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.