New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	492708 =	34 (0.810)	3 (0.080)	3/238	NT	8.6%	coding (158/1020 nt)	PP_0405	hypothetical protein
	?	NC_002947	492799 =	32 (0.820)					coding (249/1020 nt)	PP_0405	hypothetical protein

GATGTACGCCTGCAACAACTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAACGCGGCTTTTTGCTGCTT  >  NC_002947/492563‑492856                                                                                                                                                   |                                                                                                                                                      gATGTACGCCTGCAACAACTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGgcgc                                                                                                                                                    >  6:140837/1‑149 (MQ=255)   agaagggcatcgatggcgtcggcgaacaggccatcggcgttgtcggcattgatgatgtcaaggtatgtctgagtgcccagatccccaagcagcaaaaagccgcgttccaggtcctgggcgtggatcagcggcacatgtacgtcaGCGCt                                                                                                                                                   >  5:240225‑M1/145‑149 (MQ=255)     tatgCCTTCAACACCTGACGGTCTGGCTCGATTAGCAGCTCAATGATCTTTTCCGAGACAACGCCTGGGTCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGACGCTATTTCCGCTGGCAGGGCGCTGGc                                                                                                                                                <  2:192116/146‑1 (MQ=255)       cGCCTGCAACAACTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCca                                                                                                                                              <  6:222177/149‑1 (MQ=255)         ccTGCAACAACTGACGGTCTGGCTCGATGAGGAGCTCAATGATCTTTTCCGTGACAAGGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCcaca                                                                                                                                            <  4:189562/149‑1 (MQ=255)              aacaacTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTc                                                                                                                                       <  5:50220/149‑1 (MQ=255)                caacTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGt                                                                                                                                     <  5:140837/149‑1 (MQ=255)                  acTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGa                                                                                                                                   >  7:140513/1‑149 (MQ=255)                   cTGTCGGTCTGGCTGGATGAGCAGCTCCATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGAt                                                                                                                                  <  8:125128/149‑1 (MQ=255)                   cTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGAt                                                                                                                                  <  4:92987/149‑1 (MQ=255)                    tGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTgct                                                                                                                                  >  4:375/1‑146 (MQ=255)                             ggCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCTAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATgcg                                                                                                                        >  7:6408/1‑149 (MQ=255)                              gCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATgcg‑c                                                                                                                      >  7:104644/1‑149 (MQ=255)                              gCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTACGCCCCTATTTCCGATGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATgcg‑c                                                                                                                      >  7:217997/1‑149 (MQ=255)                                   aTGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCCAGGTGCCTGCAG‑GCAGCCTCACCGCTGCCAGCACCGACGCCAGCTTCCGCCGCTATTTCCGCAGGCAGGGCGCAGGCCACAGTTTCGTGATCATGGAAgcgataggt                                                                                                                  >  1:200281/1‑143 (MQ=255)                                                tGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGGAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACt                                                                                                    <  4:45245/149‑1 (MQ=255)                                                   tCTTTTCCGTGACAACGCCTTGGGCGAGGTGCCTGCAGTCCTGCCTGACCGCTGCCAGCAGCGACGCCATCTTCCGCCGCTATTTCCGCTGGCAGTGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTg                                                                                                   <  1:89793/148‑1 (MQ=255)                                                           gTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGGTGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTtc                                                                                         >  1:75275/1‑149 (MQ=255)                                                                   gCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCGCCCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCa                                                                                  <  8:104644/149‑1 (MQ=255)                                                                         ggCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGCTCATGGATGCG‑CCCCCCCCGCAGGAGACCTGCCGACCGTTCGTCGCCATCGacca                                                                           >  1:175949/1‑149 (MQ=255)                                                                             aGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACctg                                                                       >  4:26388/1‑149 (MQ=255)                                                                             aGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑‑CCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACctgc                                                                      >  3:237096/1‑149 (MQ=255)                                                                                tGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGGTGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACctgctg                                                                    <  2:75275/149‑1 (MQ=255)                                                                                       ag‑gcagCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAgcg                                                             >  5:215462/1‑149 (MQ=255)                                                                                           gcagcaaaaagccgcgttccaggtcctgggcgtggatcagcggcacatgtacgtcaGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTg                                                          >  8:164905‑M1/57‑149 (MQ=255)                                                                                                tGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGCCCGTTCGTCGCCATCGACCACCTCCTGGCCAGCGCGGACGTa                                                     >  7:120009/1‑149 (MQ=255)                                                                                                 gACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTa                                                     >  7:56485/1‑148 (MQ=255)                                                                                                  aCCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTAc                                                    <  3:26388/148‑1 (MQ=255)                                                                                                         ccAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCAt                                                                                                                               <  7:110644/67‑1 (MQ=255)                                                                                                         ccAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCAt                                                                                                                               >  8:110644/1‑67 (MQ=255)                                                                                                            gcagcGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTg                                         <  7:31883/149‑1 (MQ=255)                                                                                                               gcGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATc                                      >  2:61071/1‑149 (MQ=255)                                                                                                                 gACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑‑CCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCAc                                   <  4:237096/149‑1 (MQ=255)                                                                                                                    ctgggcgtggatcagcggcacatgtacgtcaGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAgcgc                                                            >  2:165897‑M1/32‑122 (MQ=255)                                                                                                                    ctgggcgtggatcagcggcacatgtacgtcaGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAgcgc                                                            <  1:165897‑M1/91‑1 (MQ=255)                                                                                                                            ccgccgCTATTTCCGCGGGCAGGGCGCTGGCCTCAGTGTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGa                           <  8:120009/147‑1 (MQ=255)                                                                                                                                    aTTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAAcgc                 >  6:182885/1‑149 (MQ=255)                                                                                                                                     tttCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAAcgcg                >  7:48021/1‑149 (MQ=255)                                                                                                                                     tttCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAAcgcg                >  7:26033/1‑149 (MQ=255)                                                                                                                                               cAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAACGCGGCTTTTtgct      >  8:233685/1‑149 (MQ=255)                                                                                                                                                aGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAACGCGGCTTTTtgctg     <  8:56485/149‑1 (MQ=255)                                                                                                                                                   GCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAACGCGGCTTTTTGCTGCtt  >  8:26033‑M1/1‑149 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GATGTACGCCTGCAACAACTGACGGTCTGGCTCGATGAGCAGCTCAATGATCTTTTCCGTGACAACGCCTGGGGCGAGGTGCCTGCAG‑GCAGCCTGACCGCTGCCAGCAGCGACGCCAGCTTCCGCCGCTATTTCCGCTGGCAGGGCGCTGGCCACAGTTTCGTGATCATGGATGCG‑CCCCCCCCGCAGGAGAACTGCCGACCGTTCGTCGCCATCGACCACCTGCTGGCCAGCGCTGACGTACATGTGCCGCTGATCCACGCCCAGGACCTGGAACGCGGCTTTTTGCTGCTT  >  NC_002947/492563‑492856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.