New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1856189 =	39 (0.920)	4 (0.100)	4/248	NT	10.1%	coding (1201/1341 nt)	PP_1659	hypothetical protein
	?	NC_002947	1856229 =	34 (0.840)					coding (1241/1341 nt)	PP_1659	hypothetical protein

AACTACCACCTGATCAGCACCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGATGCCATGA  >  NC_002947/1856057‑1856337                                                                                                                                     |                                                                                                                                                       aaCTACCACCTGATCAGCACCCAGTGGCCCACCGCCCCGGCGGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGc                                                                                                                                        >  2:157836/1‑149 (MQ=255) aaCTACCACCTGATCAGCACCCAGTGGCCCACCGCCCCGGCAGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGc                                                                                                                                        >  2:161686/1‑149 (MQ=255)         ccTGATCAGCACCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCa                                                                                                                                <  8:73325/149‑1 (MQ=255)          cTGATCAGCACCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAg                                                                                                                               <  2:168533/149‑1 (MQ=255)             ctatctaCCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAAGCAGGGCACCACCCCGCAGGCCTCGTCCAGCt                                                                                                                             <  5:205978/142‑1 (MQ=255)              tCAGCACCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGc                                                                                                                           <  6:128718/149‑1 (MQ=255)                  ggtcgctcatggcatcactccttggcgccggtggattgggcacgttcaagcaggaaagtgaaatcggcgaagctggtgcgcggtgactgggtcacgcgggtggtcgcgttgttgtGGCACCACCCCGCAGGCCTCGTCCAGCTGCATgg                                                                                                                       <  7:196090‑M1/34‑1 (MQ=255)                    cccAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAAACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCatcg                                                                                                                             >  6:205978/1‑138 (MQ=255)                                  actccttggcgccggtggattgggcacgttcaagcaggaaagtgaaatcggcgaagctggtgcgcggtgactgggtcacgcgggtggtcgcgttgttgtGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAAcgc                                                                                                     >  8:196090‑M1/100‑149 (MQ=255)                                     cttggcgccggtggattgggcacgttcaagcatgaaagtgaaatcggcgaatctggtgcgcggtgactgggtcaagcgggtggtccacgttgttgtGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGa                                                                                                                      >  1:191591‑M1/97‑131 (MQ=255)                                      cttggcgccggtggattgggcacgttcaagcaggaaagtgaaatcggcgaagctggtgcgcggtgactgggtcacgcgggtggtcgcgttgttgtGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGa                                                                                                                      <  2:191591‑M1/35‑1 (MQ=255)                                      cGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCAACACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCGACCACAACGCGccc                                                                                                 >  4:179995/1‑149 (MQ=255)                                          cGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAg                                                                                                                               >  2:120505/1‑117 (MQ=255)                                          cGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAg                                                                                                                               <  1:120505/117‑1 (MQ=255)                                            aTGACTGCCAGGTGCCGTCGCCGACGATCCCGTTAGGTACGGCTGCGCCGTTCTTCCTGGCCAAGGCGTCGCTGGAGAGCTACAACCAGGGCACCTCCGCGCAGGCCTCGTCCAGCTGCTTGGA‑GT‑Gc                                                                                                                <  4:221198/128‑1 (MQ=255)                                            aTGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑Gc                                                                                                                >  3:221198/1‑128 (MQ=255)                                                 tGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGAc                                                                                      >  4:52393/1‑149 (MQ=255)                                                 tGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGAc                                                                                      >  5:268943/1‑149 (MQ=255)                                                 tGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGAc                                                                                      >  3:179750/1‑149 (MQ=255)                                                     aGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GTCACAACAACGCGACCACCCGCGTGACCCAg                                                                                  <  1:157836/149‑1 (MQ=255)                                                     aGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAg                                                                                  <  1:161686/149‑1 (MQ=255)                                                              cGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCcgc                                                                                           <  5:144451/131‑1 (MQ=255)                                                              cGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCcgc                                                                                           >  6:144451/1‑131 (MQ=255)                                                               gCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCacaa                                                                                                           >  5:107921/1‑114 (MQ=255)                                                               gCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCacaa                                                                                                           <  6:107921/114‑1 (MQ=255)                                                                    ccAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑Gc                                                                                                                >  8:52765/1‑104 (MQ=255)                                                                    ccAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑Gc                                                                                                                >  4:251221/1‑104 (MQ=255)                                                                    ccAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑Gc                                                                                                                <  7:52765/104‑1 (MQ=255)                                                                    ccAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑Gc                                                                                                                <  3:251221/104‑1 (MQ=255)                                                                         ccGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGc                                                              <  4:179750/149‑1 (MQ=255)                                                                            ttAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGa                                                           >  1:255579/1‑149 (MQ=255)                                                                               ggTACGCCTGCGCCGAACTTCCTGTCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGAtt                                                         <  7:206445/148‑1 (MQ=255)                                                                               ggTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGAttt                                                        <  6:268943/149‑1 (MQ=255)                                                                                  aCGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAAcgcg                                                                                                    >  5:234076/1‑102 (MQ=255)                                                                                  aCGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAAcgcg                                                                                                    <  6:234076/102‑1 (MQ=255)                                                                                      cTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTc                                                 >  1:231197/1‑149 (MQ=255)                                                                                            cGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCtt                                           >  6:75471/1‑149 (MQ=255)                                                                                              aaCTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTg                                          >  6:78805/1‑148 (MQ=255)                                                                                                 ttCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACg                                      >  8:32524/1‑149 (MQ=255)                                                                                                    cTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGc                                   <  2:255579/149‑1 (MQ=255)                                                                                                       gCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGAGGTAGCCACAACAACGCGACCCCCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGcc                                  >  1:80843/1‑149 (MQ=255)                                                                                                                            tACAACCAGGGCACCACCCCGCAGGCCTCGTCCGGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGt            >  8:66238/1‑148 (MQ=255)                                                                                                                              cAACCAGGGCACCACCCCGCAGGCCTCGTCCGGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGAt         <  7:66238/149‑1 (MQ=255)                                                                                                                                   ggggCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGATGCCAt    >  1:247158/2‑149 (MQ=255)                                                                                                                                   aGGGCACCACCCCGCAGGCCTCGTGCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGATGCCAt    >  1:120732/1‑149 (MQ=255)                                                                                                                                     GGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGATGCCATGa  >  2:120732‑M1/1‑149 (MQ=255)                                                                                                                                     |                                                                                                                                                       AACTACCACCTGATCAGCACCCAGTGGCCCACCGCCCCGGCCGATGACTGCCAGGTGCCGTCGCCGACCAACCCGTTAGGTACGCCTGCGCCGAACTTCCTGGCCAACGCCACCCTGGAGACCTACAACCAGGGCACCACCCCGCAGGCCTCGTCCAGCTGCATGGA‑GT‑GCCACAACAACGCGACCACCCGCGTGACCCAGTCACCGCGCACCAGCTTCGCCGATTTCACTTTCCTGCTTGAACGTGCCCAATCCACCGGCGCCAAGGAGTGATGCCATGA  >  NC_002947/1856057‑1856337

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.