New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1947800	22 (0.520)	4 (0.120)	4/206	NT	17.2%	intergenic (‑61/+109)	PP_1748/PP_1749	hypothetical protein/acetyltransferase
	?	NC_002947	= 1947867	21 (0.620)					intergenic (‑128/+42)	PP_1748/PP_1749	hypothetical protein/acetyltransferase

GCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTC  >  NC_002947/1947656‑1947944                                                                                                                                                  |                                                                                                                                                 gCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCATTTGTAGCG‑AAAggg                                                                                                                                              >  2:19449/1‑149 (MQ=255)          gCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGc                                                                                                                                     <  2:64055/149‑1 (MQ=255)           cTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCg                                                                                                                                    <  4:167642/149‑1 (MQ=255)              gggATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGc                                                                                                                                  <  5:7252/148‑1 (MQ=255)                          aTTTCCCCCAGCACGGGTGTGAGATCGTCGCCACCGGGTGCGGGCAGTCGTCCGGACATGGCCCGGCCCCCGGTCGGGTTAAAATTTTCCAGTCTTGTGGCACCGGCCATGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCg                                                                                                                     <  4:53826/149‑1 (MQ=21)                             tCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCT‑AAATGGCCGCAAAGCGGCCCCGGCAATATCGGc                                                                                                                   <  1:157927/148‑1 (MQ=255)                                    gcaCGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGc                                                                                                           <  7:199531/149‑1 (MQ=255)                                         gttttGAGATATTCTAGATCGGGTTCGGGTAGTCGTTGGGACATGTCCAGGCCTCCGGTGGGGTTAAAATTTTGCTGGATTGTGGTAGCGGCCTTGTGTCGCT‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTgaga                                                                                                      <  6:161582/147‑1 (MQ=37)                                                gaTAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAtggggtgcgaagcgcccctagggtctcagcttcgctgccgatattgccggg                                                                                               >  8:128738‑M1/1‑98 (MQ=255)                                                gaTAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAg                                                                                                <  3:48782/148‑1 (MQ=255)                                                    gTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCgg                                                                                                                             >  2:146477/1‑115 (MQ=255)                                                    gTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCgg                                                                                                                             <  1:146477/115‑1 (MQ=255)                                                       gagaTCGGGGTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCtt                                                                                        <  8:210406/149‑1 (MQ=255)                                                        agaTCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCt                                                                                                          >  1:76789/1‑130 (MQ=255)                                                        agaTCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTc                                                                                       <  7:63767/149‑1 (MQ=255)                                                        agaTCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCATTTTTAGCGCAACGGGCCCCAAACGGCCCCCGGCAA‑ATAGGCAGCGCAGCGGGGACCCAAaggggggttg                                                                                       >  1:143081/1‑143 (MQ=255)                                                               gTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCg                                                                                                                                    <  8:227262/97‑1 (MQ=255)                                                               gTTCGGGGAGTCGTGCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCg                                                                                                                                    >  7:227262/1‑97 (MQ=255)                                                                       aGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAtggggtgcgaagcgcccctagggtctcagcttcgctgccgatattgccggggccgctttgcggccctttcgcga                                                                        <  7:128738‑M1/149‑75 (MQ=255)                                                                           gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAtggggtgcgaagcgcccctagggtctcagcttcgctgccgatattgccggggccgctttgcggccctttcgc                                                                          <  1:141460‑M1/143‑73 (MQ=255)                                                                           gTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAtggggtgcgaagcgcccctagggtctcagcttcgctgccgatattgccggggccgcgtttcggcccggtcgcgggaac                                                                    >  2:141460‑M1/1‑71 (MQ=255)                                                                                                                  gCAGTCTGGTGGGAGCGCCTTTGGGTCGCT‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCa                              <  7:176343/148‑1 (MQ=37)                                                                                                                                gCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATggg               >  6:174154/1‑149 (MQ=255)                                                                                                                                 cGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATggg               >  8:171469/1‑148 (MQ=255)                                                                                                                                    ccTTGTGGCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGCCAGCGAAGCTGAGACCCTCGGGGCGCTTCGCACCCCATTCGCCACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGaaa           <  1:19449/149‑1 (MQ=255)                                                                                                                                    ccTGGTGCCGCG‑AACGGCCCGCAACGCGGCCCCGCCAATATCGGCCGCGACGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCCACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGaaa           <  3:246053/149‑1 (MQ=38)                                                                                                                                     cTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCCGGCCAACGGCCGGCTATGGGGaaa           >  3:109609/1‑148 (MQ=255)                                                                                                                                       gttcccgcg‑accggGCCGAAACGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggaggcctggacatgtccgaac        >  2:141460‑M2/6‑78 (MQ=255)                                                                                                                                           tCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggaggcctggacatgtccgaacgact    <  7:128738‑M2/149‑76 (MQ=255)                                                                                                                                             gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCAttcgcgacacaaggccgctcccacaagactgcaaaattttaacccgaccggaggcctggacatgtccgaac        <  1:141460‑M2/143‑72 (MQ=255)                                                                                                                                             gcg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTc  >  4:63501/1‑149 (MQ=255)                                                                                                                                              cg‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTc  >  2:184740/1‑148 (MQ=255)                                                                                                                                                  |                                                                                                                                                 GCCGGTGGGGCTGGGGATGGCGAGCATTTCCAGCAGCACGCGTTTGAGATAGTCGAGATCGGGTTCGGGGAGTCGTTCGGACATGTCCAGGCCTCCGGTCGGGTTAAAATTTTGCAGTCTTGTGGGAGCGGCCTTGTGTCGCG‑AAAGGGCCGCAAAGCGGCCCCGGCAATATCGGCAGCGAAGCTGAGACCCTAGGGGCGCTTCGCACCCCATTCGCGACACAAGGCCGCTCCCACAAAAAGCCGAGCAGTTGTCAGGCCAACGGCCGGCTATGGGGAAACAGCAGGTC  >  NC_002947/1947656‑1947944

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.