| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2050595 | 11 (0.260) | 4 (0.130) | 4/184 | NT | 42.5% | intergenic (‑88/+87) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein |
| ? | NC_002947 | = 2050631 | 3 (0.100) | intergenic (‑124/+51) | PP_1824/PP_1825 | Smr domain‑containing protein/hypothetical protein | |||||
CGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGG > NC_002947/2050449‑2050742 | cGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACgg < 6:93785/149‑1 (MQ=255) ggATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACggg > 1:208096/1‑149 (MQ=255) cGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGAt < 8:34582/148‑1 (MQ=255) tACGCCGCCCACTTCGGCCTTTTACCCGGAAAAATCGGCCTCTTGCATGCATCCCCCCCCTACGCGGGGTATTTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTcac < 2:208096/148‑1 (MQ=21) ccgcGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGcc > 6:198556/1‑149 (MQ=255) cgcACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGa < 2:140815/149‑1 (MQ=255) ggCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGAcggcg < 5:198556/149‑1 (MQ=255) tGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGCACCCGCTCCTACGGGGATGTCACCGCGCCCGAAGACGGCgggggg > 6:218942/1‑147 (MQ=255) aaCAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGc < 4:39981/148‑1 (MQ=255) aCAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCt < 3:134591/149‑1 (MQ=255) ggAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCt > 2:232266/1‑145 (MQ=255) ggAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCt < 1:232266/145‑1 (MQ=255) aaaaaTCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtagga < 2:3265‑M1/149‑43 (MQ=255) tcgtcTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaagagcgggttc > 2:249940‑M2/1‑135 (MQ=255) cTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcaccg < 5:99301‑M2/149‑19 (MQ=255) atgatcCCTCCACGAAGGCGGCGTA‑GTTACCGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGACCCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaa < 4:161395‑M1/149‑60 (MQ=255) cTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGAGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTGCTACGGGGTTGTGACAGAGCCCGCAGCCGGCGGGGTGGCGgtaggagcggggtgacccgcgaagagggcc < 1:179656‑M2/149‑31 (MQ=255) ccACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtag < 4:133321‑M1/121‑41 (MQ=255) ccACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtag > 3:133321‑M1/1‑81 (MQ=255) ggccctctTCGCGGGTCACCCCGCTCCTACcgccaccccgccggctgcgggctctgtcacaaccccgtagcagcgggttcacccgcgaagaggcccgcacaggctgcacacctccccacagtcgcgtaaactacgccgcctacgtggag < 1:179656‑M1/146‑120 (MQ=255) ctTCGCGGGTGAACCCGCTGCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCaa > 1:58000/1‑105 (MQ=255) ttCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcggggtcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcggtaactacgccgccttcgtggagggatcat < 4:161395‑M2/149‑91 (MQ=255) cggtGAACCCGCTCCTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaag < 5:99301‑M1/148‑132 (MQ=255) gAACCCGCTCTTACaggcaccccgccgtcttcgggctctgtgacatccccgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacga > 2:249940‑M1/1‑14 (MQ=255) tCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtggaggcatcatgcaagacgacgattttt < 2:3265‑M2/149‑108 (MQ=255) cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtgg < 4:133321‑M2/121‑82 (MQ=255) cTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTgtaggagcgggttcacccgcgaagaggcccgcacaggctgcacaccgccccacagtcgcgtaaactacgccgcctacgtgg > 3:133321‑M2/1‑40 (MQ=255) tACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCg > 3:174149/1‑149 (MQ=255) cGGGGAGGTCCCAGAGCCCGAAGCCGGCGGGGGGCTTGTAGGCGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCgg < 2:179656/148‑1 (MQ=39) | CGGATCGGCTTTACGCCGCGCACTTCGGCCTTGAACAGGGAAAAATCGTCGTCTTGCATGATGCCTCCACGTAGGCGGCGTA‑GTTTACGCGACTGTGGGGCGGTGTGCAGCCTGTGCGGGCCTCTTCGCGGGTGAACCCGCTCCTACGGGGATGTCACAGAGCCCGAAGACGGCGGGGTGCCTGTAGGAGCGGGTTCACCCGCGAAGAGGCCCGCACAGGTTACGCAAAACCATCAATCGTGCTTCTTCATCAGGTGCGGCGACAGGTTAAGCTCCCGCCCGCGGCGCAAGCGG > NC_002947/2050449‑2050742 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |