New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 2258059	NA (NA)	7 (0.180)	4/242	NT	40.4%	intergenic (+114/‑278)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase
	?	NC_002947	= 2258152	11 (0.260)					intergenic (+207/‑185)	PP_1990/asd	transposase/aspartate‑semialdehyde dehydrogenase

AAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCA  >  NC_002947/2258003‑2258207                                                         |                                                                                                                                                     aaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGC                                                          >  5:205663‑M2/1‑149 (MQ=255) aaaCGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGC                                                          >  8:171705‑M2/1‑149 (MQ=255)                                 ctgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGC                                                               <  7:229361‑M2/112‑1 (MQ=255)                                 ctgcgctCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGC                                                               >  8:229361‑M2/1‑112 (MQ=255)                                                 ccTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCGGGGGCCTCAGCGCTTGAAGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgagggaaccccggcgcgccgcgccggggccggatgatgggag          <  3:198950‑M2/149‑48 (MQ=255)                                                       tCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagc    <  8:29070‑M2/149‑54 (MQ=255)                                                        ccGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCAGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcg   <  4:135677‑M2/149‑55 (MQ=255)                                                         cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgccgcgccggggccggatgctgggagcgcagcgt  <  7:179254‑M2/149‑56 (MQ=255)                                                         cGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCggagtgaggggaccccggagcgcagcgcaggggccggatgatgggagcgcagcgt  <  6:78459‑M2/149‑56 (MQ=255)                                                         |                                                                                                                                                     AAACGCTGCGCTCCCATCATCCGGCCCCTGCGCTGCGCTCCGGGGTCCCCTCACTCCGGCCTTGCTCCCGGCAGGACCGCGCCGAAGGCCCCATCCTGGGGCCTCAGCGCTTGACGGGCATCCATGCCCGTCACCTGCCTCCGCAAGGCCTGCGTTCGGCCTCCTGAAGTCGCGAAGATCAAGATCAAGATCAAGATCAAGATCA  >  NC_002947/2258003‑2258207

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.