New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3067504	32 (0.760)	4 (0.100)	4/246	NT	11.5%	coding (543/1788 nt)	qedH‑II	quinoprotein ethanol dehydrogenase
	?	NC_002947	= 3067530	31 (0.770)					coding (569/1788 nt)	qedH‑II	quinoprotein ethanol dehydrogenase

ACGTAATCAACCGCGGCGTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAGGGCACATGG  >  NC_002947/3067359‑3067643                                                                                                                                                  |                                                                                                                                             aCGTAATCAACCGCGGCGTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAgcgcc                                                                                                                                           <  5:80220/149‑1 (MQ=255)       tCAACCGCGGCGTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAgcgccgcgcc                                                                                                                                      >  8:64323/1‑148 (MQ=255)            cgcgGCGTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCgatga‑t                                                                                                                               >  7:187834/1‑149 (MQ=255)                  gTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCaa                                                                                                                         >  4:123929/1‑149 (MQ=255)                   tCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAAt                                                                                                                        >  5:71637/1‑149 (MQ=255)                       gcTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCa                                                                                                                    <  1:123575/149‑1 (MQ=255)                                   ccTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGAGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGGCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAg                                                                                                        <  6:246892/149‑1 (MQ=255)                                             ttcGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGAGTTGCcgg                                                                                              >  2:147956/1‑149 (MQ=255)                                               cGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCcggcg                                                                                            >  5:205283/1‑149 (MQ=255)                                                 gCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCttgccattgacgatcatcggcgcggcgctga                                                                                                               <  8:3869‑M1/129‑32 (MQ=255)                                                 gCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCttgccattgacgatcatcggcgcggcgctga                                                                                                               >  7:3869‑M1/1‑98 (MQ=255)                                                     gCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATg                                                                                                                       <  3:49753/116‑1 (MQ=255)                                                     gCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATg                                                                                                                       >  4:49753/1‑116 (MQ=255)                                                       tGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCggcggc                                                                                          <  1:119322/143‑1 (MQ=255)                                                       tGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCggcggc                                                                                          >  2:119322/1‑143 (MQ=255)                                                              cAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCgtgg                                                                             >  4:194802/1‑149 (MQ=255)                                                              cAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCgtgg                                                                             >  5:57263/1‑149 (MQ=255)                                                                aGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCgtggtg                                                                           >  4:86223/1‑149 (MQ=255)                                                                   tggtggCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCttgccattgacgatcatcggcgcggcgctgatggagta                                                                                                        <  6:48167‑M1/118‑39 (MQ=255)                                                                   tggtggCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCttgccattgacgatcatcggcgcggcgctgatggagta                                                                                                        >  5:48167‑M1/1‑80 (MQ=255)                                                                                    gACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGA‑‑TCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAAcc                                                     >  6:59556/1‑149 (MQ=255)                                                                                      cacCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAAcc                                                     <  6:205283/149‑1 (MQ=255)                                                                                         cGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCg                                                   >  5:86307/1‑148 (MQ=255)                                                                                                 tggtCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGc                                          <  8:187834/149‑1 (MQ=255)                                                                                                   gtCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCg                                         <  3:194802/148‑1 (MQ=255)                                                                                                        gAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAActgc                                   >  6:130553/1‑149 (MQ=255)                                                                                                          gCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAActgctg                                 <  3:86223/149‑1 (MQ=255)                                                                                                             agaagGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGAGTCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCtgtg                               >  1:202384/1‑149 (MQ=255)                                                                                                                    cGCAGACAACAAAGAAGGCTACTCCATCAGATCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGATCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGCAGAACGGCGAACTGCTGTGGATGCGcc                       >  5:271457/1‑149 (MQ=255)                                                                                                                            acaAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTg               <  5:130553/149‑1 (MQ=255)                                                                                                                            acaAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTg               <  3:123929/149‑1 (MQ=255)                                                                                                                                 gaagGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAgg          <  6:71637/149‑1 (MQ=255)                                                                                                                                     gCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAgg          >  7:193470/1‑145 (MQ=255)                                                                                                                                     gCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAgg          <  8:193470/145‑1 (MQ=255)                                                                                                                                       tACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAgctgatggagtagccttctttgtggtcggcgaccttcttgctccagaccaccttgccggtgtccttgttcagggccacca                                   <  6:48167‑M2/118‑81 (MQ=255)                                                                                                                                       tACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAgctgatggagtagccttctttgtggtcggcgaccttcttgctccagaccaccttgccggtgtccttgttcagggccacca                                   >  5:48167‑M2/1‑38 (MQ=255)                                                                                                                                         cTCCATCAGCGCCGCGCCGATGA‑TCGTGAATGGCAAGCTGATCACAGGCGTTGCCGGAGGCGAGTTCGTCGTGGTTGGCAAGATCCAGGCGTACAACCCGGATAACGGCGAACTGCTGTTGATGCGCCCCACCGTGGAAGGTCACATgt  <  6:271457/149‑2 (MQ=255)                                                                                                                                         cTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAGGGCACATgg  <  4:161330/149‑1 (MQ=255)                                                                                                                                         cTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAGGGCACATgg  >  4:495/1‑149 (MQ=255)                                                                                                                                              tCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAgctgatggagtagccttctttgtggtcggcgaccttcttgctccagaccaccttgccggtgtccttgttcagggccaccagcttggcgtccagcgtgc                 >  7:3869‑M2/1‑31 (MQ=255)                                                                                                                                              tCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAgctgatggagtagccttctttgtggtcggcgaccttcttgctccagaccaccttgccggtgtccttgttcagggccaccagcttggcgtccagcgtgc                 <  8:3869‑M2/129‑99 (MQ=255)                                                                                                                                                  |                                                                                                                                             ACGTAATCAACCGCGGCGTCGCGCTGTACGGCAACCTGGTGTTCTTCGGCACGCTGGACGCCAAGCTGGTGGCCCTGAACAAGGACACCGGCAAGGTGGTCTGGAGCAAGAAGGTCGCCGACCACAAAGAAGGCTACTCCATCAGCGCCGCGCCGATGA‑TCGTCAATGGCAAGCTGATCACAGGCGTTGCCGGCGGCGAGTTCGGCGTGGTGGGCAAGATCCAGGCGTACAACCCGGAGAACGGCGAACTGCTGTGGATGCGCCCCACCGTGGAAGGGCACATGG  >  NC_002947/3067359‑3067643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.