| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3393834 = | 21 (0.500) | 3 (0.070) | 3/250 | NT | 13.2% | coding (573/900 nt) | PP_2997 | protein CnmA |
| ? | NC_002947 | 3393867 = | 19 (0.460) | coding (540/900 nt) | PP_2997 | protein CnmA | |||||
CCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTC > NC_002947/3393697‑3393968 | ccGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCt > 4:98152/1‑149 (MQ=255) gATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCa < 1:223709/149‑1 (MQ=255) gATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCa > 6:74206/1‑149 (MQ=255) gATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCa < 5:74206/149‑1 (MQ=255) aTTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCCGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCAt > 4:126422/1‑149 (MQ=255) tCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGAACTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGcc > 4:12292/1‑148 (MQ=255) ccccAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATc < 3:118407/147‑1 (MQ=255) ccccAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGc > 7:148996/1‑149 (MQ=255) ccAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGcc > 1:143455/1‑148 (MQ=255) cAGCCCGAGAAACTCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCa < 3:48265/149‑1 (MQ=255) aGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAg < 8:148996/149‑1 (MQ=255) gaatcgggcgaagcggacctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGAtg > 8:199573‑M1/112‑147 (MQ=255) cTCGAGCATGATCCTGCGTTCGATCCCTGGCCGCGCCAATCGCGCGTCGAGCATCTTCTGCCGGGTGCCGAATCTGATCTGCACATGCCCCTCGGCCCGATACCGCTCGAGGCTCATGCCTTCGCCCAGGCGCGGATGCTGCGTGTTg < 7:98553/148‑1 (MQ=255) acctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGAtgctgc > 2:393‑M1/96‑135 (MQ=255) acctggccatcggcttcgtgccctggttgggcggggggatgtatcaacaggtgctgttcgagcaggactgggtgtgcctgagcaacccgcagcatCCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGAtgctgc < 1:393‑M1/40‑1 (MQ=255) cgccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACAcc > 7:24329/1‑147 (MQ=255) gccgTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAg < 2:9022/149‑1 (MQ=255) ttCGATCCCGGCCCGCGCCAAACCCGCTTCCATCAGCTTCTGCCCGGTGCAGAAACTTATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCCGGTTGCTCACGCACAACCAGTc > 4:110108/1‑147 (MQ=255) tcgcGCTTCCATCAGCTTCTGCCCGGTGCCGAATCTTATCTGCACTTGCCCCTCGGCGCGATACAGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGAt < 3:110108/146‑1 (MQ=255) gcagcTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCg > 7:17083/1‑149 (MQ=255) cTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGAt < 3:98152/149‑1 (MQ=255) cacaTGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGt < 8:24329/149‑1 (MQ=255) acaTGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTc < 2:143455/149‑1 (MQ=255) cccTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTc < 8:17083/149‑1 (MQ=255) | CCGATTATCTTCCCCAGCCCGAGAAACGCTGGCAGCTCGAGCATGATCCGCCGTTCGATCCCGGCCCGCGCCAATCCCGCTTCCAGCAGCTTCTGCCCGGTGCCGAAACTGATCTGCACATGCCCCTCGGCCCGATACCGCTCCAGGCTCATGCCATCGCCCAGGCGCGGATGCTGCGGGTTGCTCAGGCACACCCAGTCCTGCTCGAACAGCACCTGTTGATACATCCCCCCGCCCAACCAGGGCACGAAGCCGATGGCCAGGTCCGCTTC > NC_002947/3393697‑3393968 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |