| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4931072 = | 23 (0.540) | 4 (0.100) | 4/246 | NT | 15.4% | coding (298/375 nt) | cheY | two‑component system response regulator |
| ? | NC_002947 | 4931101 = | 22 (0.550) | coding (269/375 nt) | cheY | two‑component system response regulator | |||||
CTTCAGGGTCGACTCGAACTCGCCCAAAGACGTTTGTGATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTCGATGCCGGACATGCCC > NC_002947/4930925‑4931202 | ggaaaacggtcactacgacttcctggtgaccgactggaacatgccgggcatgtccggcatcgacctgctgcgtaaagtgcgtgccagcgacaagctgaaaagcatgccggtcttgatggtgaccgctgaagccaagcgcgaccagatCa < 7:252278‑M1/2‑1 (MQ=255) gggTCGACTCGAACTCGCCCAAAGACGTTTGTGATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGAc < 6:123972/149‑1 (MQ=255) tCGAACTCGCCCAAAGACGTTTGTGATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCt > 3:250448/1‑149 (MQ=255) gTTTGTGATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCt > 4:109092/1‑149 (MQ=255) gtgATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTc > 5:119632/1‑149 (MQ=255) tgatgaATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCTCATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTc < 1:52311/148‑1 (MQ=255) tgatgaATCCATGACGCGCCCCCCCTGACGGGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTc < 3:196527/148‑1 (MQ=255) ccATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATc < 5:40958/135‑1 (MQ=255) ccATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATc > 6:40958/1‑135 (MQ=255) cgcgCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCTAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGc > 1:224513/1‑149 (MQ=255) cgcgCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACATGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGc > 4:124950/1‑149 (MQ=255) ccggcatcgacctgctgcgtaaagtgcgtgccagcgacaagctgaaaagcatgccggtcttgatggtgaccgctgaagccaagcgcgaccagatCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGt > 2:91262‑M1/95‑130 (MQ=255) ccggcatcgacctgctgcgtaaagtgcgtgccagcgacaagctgaaaagcatgccggtcttgatggtgaccgctgaagccaagcgcgaccagatCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGt < 1:91262‑M1/36‑1 (MQ=255) gTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGAc < 6:119632/149‑1 (MQ=255) tCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTggg > 2:121468/1‑95 (MQ=255) tCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTggg < 1:121468/95‑1 (MQ=255) cgcgTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGc < 3:124950/149‑1 (MQ=255) ctgaaaagcatgccggtcttgatggtgaccgctgaagccaagcgcgaccagatCATTGACGCCAGCCTGGGCCGCTTCAATGATCTg < 3:150767‑M1/34‑1 (MQ=255) ctgaaaagcatgccggtcttgatggtgaccgctgaagccaagcgcgaccagatCATTGACGCCAGCCTGGGCCGCTTCAATGATCTg > 4:150767‑M1/54‑87 (MQ=255) ttctcgatcttctcTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCtttt < 2:220386/131‑1 (MQ=255) ttctcgatcttctcTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCtttt > 1:220386/1‑131 (MQ=255) ttctcTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTAGTCGCTGGCACGCACTTTACg > 3:54255/1‑149 (MQ=255) gCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTc < 2:224513/148‑1 (MQ=255) gCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTCGATGCCGGa > 1:22753/1‑149 (MQ=255) tGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTCGATGCCGGACATg > 1:121982/1‑149 (MQ=255) aCGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTCGATGCCGGACATGccc < 2:22753/149‑1 (MQ=255) aCCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGgc > 4:70170/1‑104 (MQ=255) aCCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGgc < 3:70170/104‑1 (MQ=255) | CTTCAGGGTCGACTCGAACTCGCCCAAAGACGTTTGTGATGAATCCATGACGCGCCCCCCCTGACGTGACTCAGCCGTTGACGCGTTCGAAGATCTTCTCGATCTTCTCTTTGAGCACCTGAGCGGTGAACGGCTTGACCACATAACCATTGACGCCAGCCTGGGCCGCTTCAATGATCTGGTCGCGCTTGGCTTCAGCGGTCACCATCAAGACCGGCATGCTTTTCAGCTTGTCGCTGGCACGCACTTTACGCAGCAGGTCGATGCCGGACATGCCC > NC_002947/4930925‑4931202 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |