New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5390643	33 (0.780)	3 (0.070)	3/250	NT	7.9%	noncoding (11/87 nt)	PP_mr56	C4 ncRNA
	?	NC_002947	= 5390712	38 (0.930)					noncoding (80/87 nt)	PP_mr56	C4 ncRNA

GCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGTTCCTGA  >  NC_002947/5390505‑5390788                                                                                                                                            |                                                                                                                                                  gCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACCGCGCGCATACCCGTGCATGG‑CGGTTGTGCag                                                                                                                                         >  8:15665/1‑148 (MQ=255)   gTTTCCCAAATATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATgg                                                                                                                                       <  5:19211/149‑1 (MQ=255)       cccAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCa                                                                                                                                   >  2:63172/1‑149 (MQ=255)          aaaGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGc                                                                                                                                >  6:13591/1‑149 (MQ=255)            aGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGCGCACGcaa                                                                                                                              <  5:20841/149‑3 (MQ=255)                aCTGCCTGCGCCTGTTTTCCGTTGCCGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTCACAGGCCGCAACCAAACACAGCGCGGATAACCGATCATGG‑CGGTTGTGCATGGGCAACGCTtccgt                                                                                                                          >  8:64636/1‑149 (MQ=255)                    cctgcGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGCCAGGCCGCAACGATACACAGCGCGCATAACCGGTCATGG‑CGGTTGTGCATGGGGCACGCTtgcgtgc                                                                                                                        <  7:15665/147‑1 (MQ=255)                    cctgcGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTgcgc                                                                                                                      >  8:235396/1‑149 (MQ=255)                            tGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCAAGCGTGccccat                                                                                                                   >  4:144415/1‑142 (MQ=255)                            tGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCAAGCGTGccccat                                                                                                                   <  3:144415/144‑3 (MQ=255)                              ttttCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCt                                                                                                              <  3:64806/147‑1 (MQ=255)                                ttCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATggg                                                                                                                                      >  4:9608/1‑121 (MQ=255)                                ttCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATggg                                                                                                                                      <  3:9608/121‑1 (MQ=255)                                       gCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGTCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCg                                                                                                    <  2:36957/148‑1 (MQ=255)                                        cGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCCTCAACGTCCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGGACGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCg                                                                                                    <  1:63172/148‑1 (MQ=255)                                                     aGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCAt                                                                                      <  3:143172/148‑1 (MQ=255)                                                          tttAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTgtgt                                                                                                          <  5:178458/123‑1 (MQ=255)                                                          tttAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTgtgt                                                                                                          >  6:178458/1‑123 (MQ=255)                                                            tAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑Cagctgtgcatgggttgacagaccggcgaacacagaaaccggcgcacgcaagcgtgccccatgcacaacc                                                                              >  5:119200‑M1/1‑80 (MQ=255)                                                                   ggTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑Cagctgtgcatgggttgacagaccggcgaacacagaaaccggcgcacgcaagcgtgccccatgcacaaccgcca                                                                          <  6:119200‑M1/146‑74 (MQ=255)                                                                       ggTCGTAGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑Cagctgtgcatgggttgacagaccggcgaacacagaaaccggcgcacgcaagcgtgccccatgcacaaccgccatgaacgg                                                                   <  5:67064‑M1/149‑81 (MQ=255)                                                                           gTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGttt                                                               >  5:62742/1‑149 (MQ=255)                                                                              gCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGa                                                             <  2:146779/148‑1 (MQ=255)                                                                                tcatcaACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTgcca                                                                          <  1:254153‑M2/133‑5 (MQ=255)                                                                                tcatcaACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTgcca                                                                          >  2:254153‑M2/1‑129 (MQ=255)                                                                                      aCGACCGGCTTTGACAGGCCGCAACGATACACGGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGtt                                                    >  2:52032/1‑149 (MQ=255)                                                                                             gCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTg                                             >  3:41828/1‑149 (MQ=255)                                                                                                      ggCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATc                                    <  6:62742/149‑1 (MQ=255)                                                                                                        ccGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATc                                    >  3:123593/1‑147 (MQ=255)                                                                                                          gCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCgaga                                <  5:13591/149‑1 (MQ=255)                                                                                                                 tACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGt                         <  7:235396/149‑1 (MQ=255)                                                                                                                   cacgGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTaa                       <  1:52032/149‑1 (MQ=255)                                                                                                                        cgcgcATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGaa                               >  4:216472/1‑136 (MQ=255)                                                                                                                        cgcgcATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGaa                               <  3:216472/136‑1 (MQ=255)                                                                                                                         gcgcATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCga                                  <  7:22919/132‑1 (MQ=255)                                                                                                                         gcgcATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCga                                  >  8:22919/1‑132 (MQ=255)                                                                                                                           gcATAACCGTTCATGG‑CGGTTGTGCATGGGTCACGCTTGCGTGCGCCGGTTTCTGTGATCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGATTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTaa               <  1:208142/149‑1 (MQ=255)                                                                                                                                 ccGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTgccatgaacggttatgcgcgctgtgtatcgttgcggcctgtcaaagccggtcgttgatgagctacgacc         <  5:67064‑M2/149‑70 (MQ=255)                                                                                                                                  cGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGt        >  4:130174/1‑149 (MQ=255)                                                                                                                                       aTGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGTTc      <  1:116881/146‑1 (MQ=255)                                                                                                                                       aTGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGTTc      >  2:116881/1‑146 (MQ=255)                                                                                                                                        tGG‑Cagctgtgcatgggttgacagaccggcgaacacagaaaccggcgcacgcaagcgtgccccatgcacaaccgccatgaacggttatgcgcgctgtgtatcgttgcggcctgtcaaagccggtcgttgatga                  >  2:254153‑M1/1‑4 (MQ=255)                                                                                                                                        tGG‑Cagctgtgcatgggttgacagaccggcgaacacagaaaccggcgcacgcaagcgtgccccatgcacaaccgccatgaacggttatgcgcgctgtgtatcgttgcggcctgtcaaagccggtcgttgatga                  <  1:254153‑M1/133‑130 (MQ=255)                                                                                                                                        tGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTgccatgaacggttatgcgcgctgtgtatcgttgcggcctgtcaaagccggtcgttgatgagcaacgacccacc     <  6:119200‑M2/146‑74 (MQ=255)                                                                                                                                        tGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGTTCCTGa  >  5:99660/1‑149 (MQ=255)                                                                                                                                            |                                                                                                                                                  GCGTTTCCCAAAGATACTGCCTGCGCCTGTTTTCCGTTGCGGTCATTTTTTCAGGGTTTTAGTCTCGGTGGGTCGTTGCTCATCAACGACCGGCTTTGACAGGCCGCAACGATACACAGCGCGCATAACCGTTCATGG‑CGGTTGTGCATGGGGCACGCTTGCGTGCGCCGGTTTCTGTGTTCGCCGGTCTGTCAACCCATGCACAGCTGCCACCATTCCGTTTGACAGCGGGTTGGCGGTGGCCCCTATCGAGAACACAGTAAAATGCTAAAGATCGTTCCTGA  >  NC_002947/5390505‑5390788

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.