New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 235329	42 (0.990)	9 (0.230)	8/238	NT	18.8%	intergenic (+26/+99)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase
	?	NC_002947	= 235390	39 (1.000)					intergenic (+87/+38)	PP_0183/argH	glutathione S‑transferase/argininosuccinate lyase

ACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGC  >  NC_002947/235248‑235536                                                                                                                                               |                                                                                                                                                    aCAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccg                                                                                                                                               <  5:194118‑M2/149‑7 (MQ=255)     ggAAGCGTCGATGCCGGCCTTCATGGAAATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaa                                                                                                                                           <  1:8054‑M2/149‑11 (MQ=255)          cGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAgg                                                                                                                                      <  2:19443/149‑1 (MQ=255)          cGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAgg                                                                                                                                      <  7:166025/149‑1 (MQ=255)           gTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAggg                                                                                                                                     >  4:107473/1‑149 (MQ=255)                   cGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGccc                                                                                                                             >  4:209891/1‑149 (MQ=255)                   cGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGccc                                                                                                                             <  3:107473/149‑1 (MQ=255)                   cGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTGTTTGAAACTTGTGCATTACCTGTTGGAGCGGGCGTGCCCGCGAAAGAGGGCGAAGcc                                                                                                                              >  3:11466/1‑148 (MQ=255)                            tGGAGATGCTCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGTGCTTTCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                    <  7:50494/149‑1 (MQ=255)                            tGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTgg                                                                                                                    <  4:95532/149‑1 (MQ=255)                                  tgatCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGAt                                                                                                               <  6:194118/148‑1 (MQ=255)                                       cGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCg                                                                                                          <  3:205255/148‑1 (MQ=255)                                        gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGc                                                                                                           >  2:93037/1‑146 (MQ=255)                                        gCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCgag                                                                                                        <  1:8712/149‑1 (MQ=255)                                                aaGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCaa                                                                                                 >  7:236622/1‑148 (MQ=255)                                                   cgcTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAgg                                                                                             <  1:65627/149‑1 (MQ=255)                                                        aGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCAGCGTTTTTGAAACTTGTGGATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagacaaagcgcgtgccgcagcggatcatctccaagaagg                                                                                        <  6:245868‑M2/149‑62 (MQ=255)                                                          tCTGGTGTTGAGCCCTTCGCGGGCAGGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTg                                                                                       <  5:225939/148‑1 (MQ=255)                                                          tCTGGTGTTGACCCCTCCGCGGGCATGCCCGCTCCCACCGGCCGCCACCGTTTTTCAACCTTGGCCATTCCCTGGGGGCGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGc                                                                                      <  3:14170/149‑1 (MQ=255)                                                              gtgtTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCac                                                                                   >  8:178418/1‑148 (MQ=255)                                                                gtTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCacgaa                                                                                <  8:236622/149‑1 (MQ=255)                                                                      cccTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACgg                                                                         >  3:204069/1‑149 (MQ=255)                                                                         ttCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGgcag                                                                      >  2:213190/1‑149 (MQ=255)                                                                         ttCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGgcag                                                                      >  6:79188/1‑149 (MQ=255)                                                                          tCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGgcag                                                                      >  8:207188/1‑148 (MQ=255)                                                                              gggCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtc                                                                  <  2:6791‑M2/149‑84 (MQ=255)                                                                                   tGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAAGTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAgcacgca                                                                <  3:134477/145‑1 (MQ=255)                                                                                   tGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAACCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACCGCAccacccacac                                                             >  4:134477/1‑146 (MQ=255)                                                                                        gCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTgcgccg                                                       <  3:209891/149‑1 (MQ=255)                                                                                          tCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgccaagatccg                                                      <  6:235616‑M2/149‑96 (MQ=255)                                                                                          tCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGgcga                                                                      >  3:177731/1‑130 (MQ=255)                                                                                          tCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGgcga                                                                      <  4:177731/132‑3 (MQ=255)                                                                                            ccACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgcca                                                             >  6:43661‑M2/1‑52 (MQ=255)                                                                                            ccACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgcca                                                             <  5:43661‑M2/140‑89 (MQ=255)                                                                                            ccACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCAtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcgtccttgtccgccaagatccgcg                                                    <  5:270112‑M2/149‑98 (MQ=255)                                                                                            acacaCGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGGCACGAACAGACGGCAGCACGCACCTgcgccgg                                                      <  7:39447/146‑1 (MQ=255)                                                                                              acaGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTgcgccggcgccg                                                 >  4:23971/1‑149 (MQ=255)                                                                                              acaGGTCTGCACCGTTTTTGAAACTTGTGCATAACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTgcgccggcgccg                                                 >  8:205753/1‑149 (MQ=255)                                                                                                aGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCAtgcacgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgccaagatccgcggcat                                                <  6:49613‑M2/149‑102 (MQ=255)                                                                                                 ggTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTac                                              <  5:79188/149‑1 (MQ=255)                                                                                                       cACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgccaagatccgcggcatgtgcgg                                          >  5:235616‑M2/1‑41 (MQ=255)                                                                                                                 caaaCTTTTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAc                               <  8:193934/147‑1 (MQ=255)                                                                                                                  aaaCTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCAcgc                             <  7:178418/149‑1 (MQ=255)                                                                                                                   aaCTTGGGCATTACCTGTGGGAGCGGGCGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgccaagatccgcggcatgtgcgggttctcccccatc                             >  5:245868‑M2/1‑29 (MQ=255)                                                                                                                         tgCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCa                      <  7:207188/149‑1 (MQ=255)                                                                                                                             ttACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCAcc                    >  2:58885/1‑147 (MQ=255)                                                                                                                                 cTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCaa                                        >  5:167809/1‑123 (MQ=255)                                                                                                                                 cTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCaa                                        <  6:167809/123‑1 (MQ=255)                                                                                                                                 cTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCt              >  8:140191/1‑149 (MQ=255)                                                                                                                                    tgGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTc            <  1:213190/148‑1 (MQ=255)                                                                                                                                       gAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGc        >  6:57035/1‑149 (MQ=255)                                                                                                                                       gAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGc        <  1:100917/149‑1 (MQ=255)                                                                                                                                              cGtgcccgcgaagggctcaacaccagactcagcgcttgccgctgcggatcatctccatgaaggccggcatcgacgcttccttgtccgccaagatccgcggcatgtgcgggttctcccccatcagttgcagcaacgccttggcctgcggg  >  1:6791‑M2/1‑2 (MQ=255)                                                                                                                                               |                                                                                                                                                    ACAAGGAAGCGTCGATGCCGGCCTTCATGGAGATGATCCGCAGCGGCAAGCGCTGAGTCTGGTGTTGAGCCCTTCGCGGGCATGCCCGCTCCCACAGGTCTGCACCGTTTTTGAAACTTGTGCATTACCTGTGGGAGCGGGCGTGCCCGCGAACGAGGGCGAAGCCCTCGCCTTGGGGGATTAGCGAGACGCCAACAGGGCCTTGCCACGAAC‑GACGGCAGCACGCACCTGCGCCGGCGCCGTACCACCAATGTGGTCACGCGCATTCACCGAGCCTTCCAGCGTCAGC  >  NC_002947/235248‑235536

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.