New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	682055 =	46 (1.090)	3 (0.070)	3/250	NT	6.4%	coding (1218/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer
	?	NC_002947	682098 =	43 (1.050)					coding (1175/1944 nt)	PP_0584	methyl‑accepting chemotaxis transducer

TTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAG  >  NC_002947/681950‑682246                                                                                                                                                     |                                                                                                                                                     gttcaaccagttcctcggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgaCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGt                                                                                                                                                      >  3:262243‑M1/106‑149 (MQ=255)    gcgGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCa                                                                                                                                                    <  6:261129/148‑1 (MQ=255)    gcgGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCa                                                                                                                                                    <  7:115967/148‑1 (MQ=255)    caaccagttcctcggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgaCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCa                                                                                                                                                    >  3:63467‑M1/103‑148 (MQ=255)      accagttcctcggtgccattcgcagcctgatccagcacatcggcactgctgccagcaagatcctcagcacgtccagcagctcgacccgcgtctccagtgaCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTg                                                                                                                                                 >  3:188575‑M1/101‑149 (MQ=255)          ctgctgctgGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTGCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGgaga                                                                                                                                             <  6:252705/149‑1 (MQ=255)             ctgctgGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGAcgc                                                                                                                                          <  8:149011/149‑1 (MQ=255)               gctgGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTTGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCgg                                                                                                                                        <  8:119255/149‑1 (MQ=255)                ctgGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGTAATGCGGTGGAAACCTTGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCggg                                                                                                                                       <  7:113277/149‑1 (MQ=255)                   gCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTc                                                                                                                                     >  5:67825/1‑148 (MQ=255)                          tCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAgctg                                                                                                                               <  1:238212/147‑1 (MQ=255)                           cGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGAcg                                                                                                                                           >  4:28218/1‑134 (MQ=255)                           cGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGAcg                                                                                                                                           <  3:28218/134‑1 (MQ=255)                            ggCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCTCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTgg                                                                                                                           >  4:197963/1‑149 (MQ=255)                                         gccTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGAt                                                                                                              <  3:252910/149‑1 (MQ=255)                                             ggCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCtt                                                                                                           >  6:125022/1‑148 (MQ=255)                                              gCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGTTGAGGATCtt                                                                                                           <  3:188654/147‑1 (MQ=255)                                              gCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTg                                                                                                          <  6:118419/148‑1 (MQ=255)                                                          tGCCACTTCATTGGCGGTGGCGACCTTTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGTCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCTAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGc                                                                                             <  5:115345/149‑1 (MQ=255)                                                                  cATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGTATCTTGCTGGCAGCAGTGCCGAtgtg                                                                                      <  2:222382/148‑1 (MQ=255)                                                                   aTTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGc                                                                                     <  6:67825/148‑1 (MQ=255)                                                                            ggCGACCATTTCGTGGAATGCGGTGGAAACAATGTCCGCGGCTTCGCGCTGGCGGCCGGCAGCCTCGGCCATGTCACTGGAGACGAGGGTCGAGCTGCTGGAAGTGCTGAGGATCTTGATGGCAGCAGTGCCGATGTGCTGGATAAGGc                                                                           >  5:166966/1‑149 (MQ=255)                                                                               gACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGc                                                                        >  1:65643/1‑149 (MQ=255)                                                                                 ccATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGAGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCg                                                                       >  5:66594/1‑148 (MQ=255)                                                                                    tttCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATg                                                                   <  2:65643/149‑1 (MQ=255)                                                                                       cGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCa                                                                >  5:187390/1‑149 (MQ=255)                                                                                         tgtaaTGCGGTGGAAACGATGTCGACGGCTTGGCGGTGGGGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCAcc                                                              <  3:31389/146‑1 (MQ=255)                                                                                           gAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGAc                                                                                                                         <  2:34492/88‑1 (MQ=255)                                                                                           gAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGAc                                                                                                                         >  1:34492/1‑88 (MQ=255)                                                                                                cGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAAc                                                       >  5:195359/1‑149 (MQ=255)                                                                                                    ggAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTAGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGt                                                   >  5:121104/1‑149 (MQ=255)                                                                                                    cagtgacatggccgaggcggccggccgccagcgcgaagccgtggacatgTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGt                                                   >  3:188575‑M2/50‑149 (MQ=255)                                                                                                     gAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGtt                                                  <  5:125022/149‑1 (MQ=255)                                                                                                       tgacatggccgaggcggccggccgccagcgcgaagccgtggacatgTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTg                                                 >  3:63467‑M2/47‑148 (MQ=255)                                                                                                       aaCCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGaa                                                                     >  1:113281/1‑128 (MQ=255)                                                                                                       aaCCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGaa                                                                     <  2:113281/128‑1 (MQ=255)                                                                                                         ccATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAAc                                              >  5:126038/1‑149 (MQ=255)                                                                                                         acatggccgaggcggccggccgccagcgcgaagccgtggacatgTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAAc                                              >  3:262243‑M2/45‑149 (MQ=255)                                                                                                                cACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTg                                        <  6:66594/148‑1 (MQ=255)                                                                                                                 aCGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGc                                      >  3:40739/1‑149 (MQ=255)                                                                                                                 aCGGCTGCGCGCTGGCGGCCGGCCGCCTCGGCCATGGCACTGCAGCCGCGGGTCGAGCTGCTGGACGCGCTGAGGATCTTGCTGGCAGCAGTGCCGATGGGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGc                                      <  2:232358/149‑1 (MQ=255)                                                                                                                    gCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAg                                   <  4:40739/149‑1 (MQ=255)                                                                                                                     cTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAg                                           <  8:85025/140‑1 (MQ=255)                                                                                                                     cTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAg                                           >  7:85025/1‑140 (MQ=255)                                                                                                                           gcTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGcgcg                            >  5:45729/1‑149 (MQ=255)                                                                                                                            cTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCAGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGc                                                                        <  7:183728/104‑1 (MQ=255)                                                                                                                            cTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCAGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGc                                                                        >  8:183728/1‑104 (MQ=255)                                                                                                                                 ggccggccGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTgg                                                    <  6:44800/119‑1 (MQ=255)                                                                                                                                 ggccggccGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTgg                                                    >  5:44800/1‑119 (MQ=255)                                                                                                                                 ggccggccGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTtcg                      >  3:225670/1‑149 (MQ=255)                                                                                                                                 ggccggccGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTtcg                      >  1:11155/1‑149 (MQ=255)                                                                                                                                            gtggacatgTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCcgcg           <  4:262243‑M2/140‑1 (MQ=255)                                                                                                                                              ggCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGa         <  3:197963/149‑1 (MQ=255)                                                                                                                                                     tCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAg  <  6:195359/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TTCGCGGGCCTGCTGCTGGCCGCTATCGGCCGACTGCGCCGCCTGGCTGCAGGACCGTGCCACTTCATTGGCGGTGGCGACCATTTCGTGGAATGCGGTGGAAACCATGTCCACGGCTTCGCGCTGGCGGCCGGCCGCCTCGGCCATGTCACTGGAGACGCGGGTCGAGCTGCTGGACGTGCTGAGGATCTTGCTGGCAGCAGTGCCGATGTGCTGGATCAGGCTGCGAATGGCACCGAGGAACTGGTTGAACCAGTTGGCCAGTTGCGCGGTTTCGTCGCGGCCGCGGATTTCCAG  >  NC_002947/681950‑682246

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.