New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1025293	39 (0.920)	9 (0.270)	5/204	NT	21.7%	intergenic (‑147/+82)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein
	?	NC_002947	= 1025332	34 (1.020)					intergenic (‑186/+43)	opdP/dppA‑II	glycine‑glutamate dipeptide porin/dipeptide ABC transporter substrate‑binding protein

TTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGG  >  NC_002947/1025184‑1025479                                                                                                                                                     |                                                                                                                                                    ttGTGGGGCGGGTGTTTGCTGCGGTGTTGCCTGGGGTGGCGAGGGATCGGCGGGAAGAATGGGGGCGTTGTGTTGGGCGTTCTGGCCTCTTCGCGGGCTAGCCCGCTGCCTCAGGTAGGGCGCAGTGTCCGAACGTGTGGATATCCtgt                                                                                                                                                     <  8:209527/149‑1 (MQ=255)   gtgGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCtgt                                                                                                                                                     <  5:237034/147‑1 (MQ=255)     aggcCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTggga                                                                                                                                                 >  2:71315‑M2/2‑145 (MQ=255)        ccGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGAATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcg                                                                                                                                              <  1:184704‑M2/149‑8 (MQ=255)         cGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgg                                                                                                                                             >  6:238128‑M2/1‑141 (MQ=255)          gggTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAACCCCGCGCCCACAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATACGGTgggcgcggg                                                                                                                                            <  6:169885‑M2/149‑10 (MQ=255)                ttGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcc                                                                                                                                      >  1:107882‑M2/1‑134 (MQ=255)                      cGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCTGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaa                                                                                                                                >  1:73300‑M2/1‑128 (MQ=255)                      cGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGGGCAGTGTGCGAACCTGGCGAGCTGCGGTgggcgcgggcttgcccgcg                                                                                                                                  <  5:143497‑M2/147‑20 (MQ=255)                           ttGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTg                                                                                                                                                    <  6:256435‑M2/124‑2 (MQ=255)                           ttGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTg                                                                                                                                                    >  5:256435‑M2/1‑123 (MQ=255)                                aGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTa                                                                                                                      >  8:51640/1‑149 (MQ=255)                                    gTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTgg                                                                                                                  <  2:184704/149‑1 (MQ=255)                                         gcgGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGCACCAGTAGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTTCAGGCTAAc                                                                                                             >  2:80119/1‑149 (MQ=38)                                         gcgGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCGCAGGTAGGGCGCAGTGTCCGAACCTGTGGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAAc                                                                                                             >  1:144651/1‑149 (MQ=255)                                                         gactCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGCCAAGCCCGCTCCCTCAGGTAGCGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTca                                                                                             <  5:59698/146‑1 (MQ=255)                                                           ttgggggCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGAACGCCGGCTCCCTCAGGTCGGGCGCTGTGTCCTAACCTGTCGAGATCCTGGGGGCGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTcac                                                                                            <  2:228206/145‑1 (MQ=38)                                                                      gtgtTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTGCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCGACCGCTTAATCCACACTCCCCCCGGAAAAAt                                                                                 >  1:5409/1‑148 (MQ=37)                                                                       tgtTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGTTGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCa                                                                               <  1:80119/149‑1 (MQ=255)                                                                       tgtTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCa                                                                               >  7:195247/1‑149 (MQ=255)                                                                                       ctctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACAGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGc                                                               >  7:120752/1‑149 (MQ=255)                                                                                        tctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTg                                                                                                                                                    <  3:52417‑M2/63‑2 (MQ=255)                                                                                        tctTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTg                                                                                                                                                    >  4:52417‑M2/1‑62 (MQ=255)                                                                                             gcgGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCt                                                         >  6:109755/1‑149 (MQ=255)                                                                                             gcgGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCt                                                         <  7:51640/149‑1 (MQ=255)                                                                                             gcgGCCACGCCCGCCCCCCCCGGTAGGCCGCAGGGGCCCACCCTCCCGCCTCCCTTGGGGCGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGAcc                                                          <  2:144651/148‑1 (MQ=255)                                                                                               gggCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCtt                                                        >  1:248163/1‑148 (MQ=255)                                                                                                   aaGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACt                                                   <  5:109755/149‑1 (MQ=255)                                                                                                   aaGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACt                                                   >  6:149168/1‑149 (MQ=255)                                                                                                    cccccGATCCCTCTGGTTGGGCTCTGGCGCCCACCCTGTCGAGATCGTGTGGGAGGGGGCTTGCCCGCTAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTg                                                  <  5:169885/147‑1 (MQ=255)                                                                                                    aGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgc                                                                           >  5:91100/1‑124 (MQ=255)                                                                                                    aGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTgc                                                                           <  6:91100/124‑1 (MQ=255)                                                                                                     gCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTgg                                                 <  5:149168/149‑1 (MQ=255)                                                                                                      cccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcaccc                                                <  7:58498‑M2/149‑102 (MQ=255)                                                                                                      cccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcaccc                                                <  7:62185‑M2/149‑102 (MQ=255)                                                                                                       ccGCTCCCTCCGGCAGGGCCCCGTGCCCTCACTTGTCTCGACCCTGGGGCTGGGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGa                                               <  2:239179/149‑1 (MQ=255)                                                                                                       ccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccg                                               <  6:202874‑M2/149‑103 (MQ=255)                                                                                                       ccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTaa                                                                                                       >  8:118083/1‑93 (MQ=255)                                                                                                       ccGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTaa                                                                                                       <  7:118083/93‑1 (MQ=255)                                                                                                        cGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTACTCAACACTCACACCGGAAAAATCATTGCGCCCTAACGGGCTGACCTTGAACTGGGa                                               >  3:8578/1‑148 (MQ=255)                                                                                                           tCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgccggcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcag                                                         <  1:78098‑M2/135‑93 (MQ=255)                                                                                                           tCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcag                                                         >  2:74713‑M2/1‑43 (MQ=255)                                                                                                           tCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcag                                                         <  1:74713‑M2/135‑93 (MQ=255)                                                                                                           tCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcag                                                         >  2:78098‑M2/1‑43 (MQ=255)                                                                                                              cTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCtt                                         >  5:54925/1‑148 (MQ=255)                                                                                                                cAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGAc                                      >  8:122574/1‑149 (MQ=255)                                                                                                                   gTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGc                                    >  1:177588/1‑148 (MQ=255)                                                                                                                                   gAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATAATTGCGCCCAAACCCGCTGACCTTGAACTGGCAAACCTTGACGCTAAGCGGCTGGCTCAc                    >  1:165753/1‑148 (MQ=255)                                                                                                                                     aCCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGAt                 <  6:210256/149‑1 (MQ=255)                                                                                                                                         gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCt                                                              >  7:47200/1‑100 (MQ=255)                                                                                                                                         gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCt                                                              >  7:50754/1‑100 (MQ=255)                                                                                                                                         gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCt                                                              <  8:47200/100‑1 (MQ=255)                                                                                                                                         gTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCt                                                              <  8:50754/100‑1 (MQ=255)                                                                                                                                          tCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccggcccacaaggccggccataactagaaaagaaagg             >  8:58498‑M2/1‑12 (MQ=255)                                                                                                                                          tCGAGATCCTGTgggagcgggcttgcccgcgaagaggccagaacggccaacacaacgccccgattctgcccggcgatcccgcggcacccctggcaacaccgcagcaatcacccggcccacaaggccggccataactagaaaagaaagg             >  8:62185‑M2/1‑12 (MQ=255)                                                                                                                                           cGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGatta           >  5:21661/1‑146 (MQ=255)                                                                                                                                              gaTCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATgcgc        <  8:195247/149‑1 (MQ=255)                                                                                                                                                    gtgGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCgg  >  5:111386/1‑149 (MQ=255)                                                                                                                                                     |                                                                                                                                                    TTGTGGGCCGGGTGATTGCTGCGGTGTTGCCAGGGGTGCCGCGGGATCGCCGGGCAGAATCGGGGCGTTGTGTTGGCCGTTCTGGCCTCTTCGCGGGCAAGCCCGCTCCCTCAGGTAGGGCGCAGTGTCCGAACCTGTCGAGATCCTGTGGGAGCGGGCTTGCCCGCGAAGAGGCCGGTACTGGCTAACGCTTAATCAACACTCACACCGGAAAAATCATTGCGCCCAAACGGGCTGACCTTGAACTGGGAAACCTTGACGCTAAGCGGCTGGCTCACGATGGAATGCGCCACCGG  >  NC_002947/1025184‑1025479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.