New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1738653 =	25 (0.590)	3 (0.070)	3/248	NT	10.9%	coding (540/1107 nt)	PP_1532	putative Phage integrase
	?	NC_002947	1738686 =	25 (0.620)					coding (507/1107 nt)	PP_1532	putative Phage integrase

GCGCTGCCCGGTTATAAGAGCGAGCTCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCG  >  NC_002947/1738542‑1738830                                                                                                                                                  |                                                                                                                                                  ggattacctatcgacctacgtcaaagagggtaaggcccagatggccagggctatgcgctccttactgcgcgaccttttcatgggggccatggccaggggctgggtcgactacAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑Ag                                                                                                                                               >  4:199750‑M1/113‑149 (MQ=255) ggattacctatcgacctacgtcaaagagggtaaggcccagatggccagggctatgcgctccttactgcgcgaccttttcatgggggccatggccaggggctgggtcgactacAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑Ag                                                                                                                                               <  3:199750‑M1/37‑1 (MQ=255)    cTGCCCGGTTATAAGAGCGAGCTCCATGGCGCACTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGa                                                                                                                                           <  1:69724/149‑1 (MQ=255)                aaGAGCGAGCTCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTgg                                                                                                                               >  8:180250/1‑149 (MQ=255)                  gagcgagcTCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTTAAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGc                                                                                                                              <  1:205518/149‑1 (MQ=255)                  gagcgagcTCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTCCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGc                                                                                                                              >  4:147201/1‑148 (MQ=255)                  acgtcaaagagggtaaggcccagatggccagggctatgcgctccttactgcgcgaccttttcatgggggccatggccaggggctgggtcgactacAACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGt                                                                                                                                              <  2:92731‑M1/38‑1 (MQ=255)                          tCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGcc                                                                                                                             <  6:207412/141‑1 (MQ=255)                          tCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGcc                                                                                                                             >  5:207412/1‑141 (MQ=255)                                   cgcTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCAGAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAg                                                                                                            <  1:655/149‑1 (MQ=255)                                             aTGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAg                                                                                                   >  5:113988/1‑148 (MQ=255)                                             aTGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAg                                                                                                   >  3:75474/1‑148 (MQ=255)                                             aTGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGAGATGGCGCTTGATCTT‑AACCCTTGCGGCTTTGGTTGCTTCGACTGGGTTGT‑AGTGGACCAAGCCCCTGGCAATGGACCGCATGATAAGGtagatcag                                                                                                   >  5:15180/1‑141 (MQ=255)                                                              tcATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGTCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCt                                                                                 >  3:200554/1‑149 (MQ=255)                                                                aTACATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTgg                                                                               <  4:15450/149‑1 (MQ=255)                                                                        cTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTgg                                                                       >  8:43603/1‑149 (MQ=255)                                                                            ccACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGcc                                                                    <  7:43603/148‑1 (MQ=255)                                                                              acaACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTa                                                                 >  2:145766/1‑149 (MQ=255)                                                                                    ctAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCctct                                                           >  7:120200/1‑149 (MQ=255)                                                                                       gCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGTCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCttt                                                         <  4:200554/148‑1 (MQ=255)                                                                                          tCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACg                                                     >  2:135189/1‑149 (MQ=255)                                                                                                      gctTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAgg                                         >  5:198531/1‑149 (MQ=255)                                                                                                            tCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATcc                                   >  8:125701/1‑149 (MQ=255)                                                                                                            actacaacccagtcgaagctaccaaagccgcacgggttGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGt                                                    <  2:92731‑M2/95‑1 (MQ=255)                                                                                                             ctacaacccagtcgaagctaccaaagccgcacgggttGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATcc                                   <  3:199750‑M2/112‑1 (MQ=255)                                                                                                             ctacaacccagtcgaagctaccaaagccgcacgggttGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATcc                                   >  4:199750‑M2/38‑149 (MQ=255)                                                                                                                 AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGTGAGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCcgc                                 <  1:40593‑M1/148‑1 (MQ=255)                                                                                                                            cTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGgtc                    <  2:270332/149‑1 (MQ=255)                                                                                                                                 gTAGCTTCGACTGGGTTGT‑AGTCGACCCTGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAg               >  7:155347/1‑149 (MQ=255)                                                                                                                                     cTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTg           >  2:70610/1‑149 (MQ=255)                                                                                                                                      ttCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGc          >  7:52706/1‑149 (MQ=255)                                                                                                                                      ttCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGc          <  8:52706/149‑1 (MQ=255)                                                                                                                                            tGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTGCATGGTCGTCAGCGTGCGGATAc    >  6:81882/1‑149 (MQ=255)                                                                                                                                              ggttGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACcg  <  2:40593‑M2/145‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GCGCTGCCCGGTTATAAGAGCGAGCTCCATGGCGCGCTTGAGCCATGGCTGGGCAGCCTCCTCATAGATCGCTTTCCACAACTCTAGCGTCAGGCGCTGGCGCTTGATCTT‑AACCCGTGCGGCTTTGGTAGCTTCGACTGGGTTGT‑AGTCGACCCAGCCCCTGGCCATGGCCCCCATGAAAAGGTCGCGCAGTAAGGAGCGCATAGCCCTGGCCATCTGGGCCTTACCCTCTTTGACGTAGGTCGATAGGTAATCCGCGATGTCCATGGTCGTCAGCGTGCGGATACCG  >  NC_002947/1738542‑1738830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.