New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3221462 =	20 (0.470)	4 (0.100)	4/242	NT	20.1%	coding (1232/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer
	?	NC_002947	3221508 =	13 (0.330)					coding (1186/1653 nt)	PP_2823	methyl‑accepting chemotaxis transducer

TTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTTATGC  >  NC_002947/3221360‑3221656                                                                                                                                                     |                                                                                                                                                      ttttGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAg                                                                                                                                                       >  7:217589/1‑149 (MQ=255) ttttGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTAGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAg                                                                                                                                                       >  6:76966/1‑149 (MQ=255)  cgtgctcagctcggtgcaggccatggaacaactggaagcagaaacccagcacgtcggctcggtgctgacggtgatccgcagcatcgccgaacagaccaaccTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAgg                                                                                                                                                      >  5:37561‑M1/102‑149 (MQ=255)         gcgcTGGATCATGTCTTGGATCTGCGCGGGGGAAGCGGTCGTGTTCTGGGCCCGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCt                                                                                                                                               <  8:171518/149‑1 (MQ=255)               gatgatGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTc                                                                                                                                           <  6:177016/147‑1 (MQ=255)                    tgTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCTGGGCGAGCAGGTTGGTCTGTTAGGCGAtg                                                                                                                                    >  5:241609/1‑149 (MQ=255)                                 cgcgGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCAcc                                                                                                                        <  5:236916/148‑1 (MQ=255)                                      tGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAg                                                                                                                   >  3:249395/1‑148 (MQ=255)                                                              ggTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCt                                                                                          >  2:184391/1‑149 (MQ=255)                                                                         tCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttg                                                                               >  2:135041/1‑149 (MQ=255)                                                                                 gACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATgg                                                                       <  8:217589/149‑1 (MQ=255)                                                                                    cACGGCAAAGCCCCGCCCTTGCTCGCCACCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGACTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTCGTTCCAGTTGTTCCATGGCCt                                                                    >  3:264092/1‑149 (MQ=255)                                                                                            aGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAg                                                            >  1:39245/1‑149 (MQ=255)                                                                                                     cctgctcgccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACg                                                   >  5:37561‑M2/49‑149 (MQ=255)                                                                                                        GCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGc                                                  >  1:265573‑M1/1‑147 (MQ=255)                                                                                                         CTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAgttgtt                                                                             >  2:268451‑M1/1‑119 (MQ=255)                                                                                                         CTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGt                                               <  8:223980‑M1/149‑1 (MQ=255)                                                                                                            gccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGc                                                                      <  3:79713‑M2/82‑1 (MQ=255)                                                                                                            gccctgaacgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGc                                                                      >  4:79713‑M2/42‑123 (MQ=255)                                                                                                            GCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGt‑t                                             >  4:249395‑M1/1‑147 (MQ=255)                                                                                                            GCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGc                                           >  7:223980‑M1/1‑149 (MQ=255)                                                                                                            GCCAGCCCGTGCCGCTTCGATGGCGGCGGTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑Tg                                            >  3:29387‑M1/1‑148 (MQ=255)                                                                                                              CAGCGCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGccc                                         >  4:264092‑M1/1‑149 (MQ=255)                                                                                                              CAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGccc                                         >  1:135041‑M1/1‑149 (MQ=255)                                                                                                               aGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGCCCa                                        <  3:236296/149‑1 (MQ=255)                                                                                                                   acgccgccatcgaagcggcacgggctggcgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGCCCAGGTc                                    <  6:37561‑M2/115‑1 (MQ=255)                                                                                                                               aTGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGt‑t                                             >  8:57622/1‑128 (MQ=255)                                                                                                                               aTGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGt‑t                                             <  7:57622/128‑1 (MQ=255)                                                                                                                                               cgagcaGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGTATGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGAt         <  1:184391‑M2/143‑1 (MQ=255)                                                                                                                                                     ggTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTTATGc  <  2:39245/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                      TTTTGCAGGCGCTGGATGATGTCTTGGATCTGCGCGGTGGAAGCGGTCGTTTTCTGGGCCAGGTTGCGCACCTCATCGGCGACCACGGCAAAGCCCCGCCCTTGCTCGCCAGCCCGTGCCGCTTCGATGGCGGCGTTCAGGGCGAGCAGGTTGGTCTGTTCGGCGATGCTGCGGATCACCGTCAGCACCGAGCCGACGTGCTGGGTTTCTGCTTCCAGTTGTTCCATGGCCTGCACCGAGCTGAGCACGCTGT‑TGCCCAGGTCGCCGATGCTCAAGGACAGGCTGTCGATGTTATGC  >  NC_002947/3221360‑3221656

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.