| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 3968879 | NA (NA) | 6 (0.150) | 6/244 | NT | 12.9% | coding (1007/1179 nt) | PP_3498 | transposase |
| ? | NC_002947 | 3968942 = | 43 (1.020) | coding (1070/1179 nt) | PP_3498 | transposase | |||||
AGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAC > NC_002947/3968795‑3969090 | attccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcc > 7:107459‑M2/149‑149 (MQ=255) tccgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctcattcCg > 8:105706‑M2/147‑148 (MQ=255) cgccttcttcggtatcgtgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaagtcctgattcCGATc < 6:66975‑M2/5‑1 (MQ=255) tgcccgatcagcacagcagcggaaacaaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgtgccagctaaggcctgattcCGATCAGGCTGGCTAATCGaaa > 5:231490‑M2/128‑149 (MQ=255) atgatCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATgg < 4:235663/147‑1 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTg > 6:146059/1‑149 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTg > 4:236839/1‑149 (MQ=32) tCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCAGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGcccag > 8:29255/1‑147 (MQ=17) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATg > 6:239927/1‑139 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATg < 1:79348/139‑1 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATg < 5:239927/139‑1 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATg > 2:79348/1‑139 (MQ=32) aGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa < 3:110990/149‑1 (MQ=32) gggCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa > 8:71879/1‑148 (MQ=32) aaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGAt < 6:48470‑M2/4‑1 (MQ=255) aaaatcagattgggcaagatgagcaagcgcggtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGAt > 5:48470‑M2/102‑105 (MQ=255) cgcgcATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACaga < 4:59355/149‑1 (MQ=32) ccGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAg > 8:187755/1‑149 (MQ=32) tCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGtt > 1:62117/1‑149 (MQ=32) ccAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc > 6:229310/1‑149 (MQ=32) cAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAAc < 7:105706/148‑1 (MQ=32) cAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACg < 5:229310/149‑1 (MQ=32) tAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCaaa > 5:239022/1‑149 (MQ=32) gCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcg > 6:116282/1‑148 (MQ=32) gtgacggctacatacgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaa < 6:231490‑M2/79‑1 (MQ=255) cTGATTCCGATCAGCCAGATGATCGCCCCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCAGTTACAGAGCGATCAGGTTTACCAACGCAAACcgaac > 3:54176/1‑149 (MQ=17) tCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaa < 7:71879/148‑1 (MQ=32) ccGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGaaaaa > 8:124855/1‑149 (MQ=32) aTCAGCCAGATGATCGCCGCCTCTTGGGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACAAACGAAAACCGAACGAAAAACCg > 1:64794/1‑149 (MQ=12) aTCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg < 3:236839/149‑1 (MQ=32) tCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCg > 6:114986/1‑148 (MQ=32) cAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGa < 6:239022/149‑1 (MQ=32) tacgcagcctgatgatccagggcgcgcattccgtcttgagccagctacggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCGAACCGAACGAAAAACCg > 4:175000‑M2/59‑147 (MQ=255) acgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATta > 5:193708‑M2/58‑90 (MQ=255) acgcagcctgatgatccagggcgcgcattccgtcttgagccagctaaggcctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATta < 6:193708‑M2/33‑1 (MQ=255) ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGGTGGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAgg > 1:70373/1‑149 (MQ=12) ccAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggc > 3:88988/1‑149 (MQ=32) cAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcg > 3:229005/1‑149 (MQ=32) aGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg > 7:5213/1‑149 (MQ=32) aGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg > 8:30865/1‑149 (MQ=32) aGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAggcgg < 4:229005/149‑1 (MQ=32) gatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa < 1:12441/96‑1 (MQ=33) gatCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTa > 2:12441/1‑96 (MQ=33) tctTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGa > 1:268775/1‑149 (MQ=32) ggCTATCCCGCCTTGGGCGCAAGGAGG‑GGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAACCCGGAGGCGGCTATGAGCCTCTGACCAACCggg < 4:54176/149‑1 (MQ=17) gCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCggg < 8:5213/148‑1 (MQ=32) gCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg < 7:187755/147‑1 (MQ=32) gCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCgg < 7:30865/147‑1 (MQ=32) cGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAAc > 2:225958/1‑109 (MQ=32) cGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAAc < 1:225958/109‑1 (MQ=32) cGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAgg > 6:114872/1‑115 (MQ=32) cGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAgg < 5:114872/115‑1 (MQ=32) gagg‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGgcg < 4:88988/149‑1 (MQ=32) ctgattcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGgcg > 4:48540‑M2/8‑149 (MQ=255) g‑cggcgATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTc < 2:268775/149‑1 (MQ=32) ttcCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTc < 3:48540‑M2/145‑1 (MQ=255) CGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAc < 7:124855‑M2/149‑1 (MQ=255) | AGATGAGCAAGCGCGGTGACGGCTACATACGCAGCCTGATGATCCAGGGCGCGCATTCCGTCTTGAGCCAGCTAAGGCCTGATTCCGATCAGCCAGATGATCGCCGCCTCTTGCGCTGGCTATCCCGCCTTGGGCGCAAGGAGG‑CGGCGATCAGGCTGGCTAATCGAAATCTGCGGATTATATGGGCCCTGTTACAGAGCGATCAGGTTTACCAACGCAAACCGAACGAAAAACCGGAGGCGGCTATGAGCCTCTGACCAACCGGGTAATGCCACCGGGGCGCTAGGCGCTCCAAC > NC_002947/3968795‑3969090 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |