New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4794992 =	35 (0.830)	4 (0.100)	4/248	NT	11.3%	intergenic (‑14/+92)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase
	?	NC_002947	4795022 =	29 (0.710)					intergenic (‑44/+62)	PP_4222/pvdH	protein SyrP/diaminobutyrate‑2‑oxoglutarate transaminase

TCCAGCAAGCCAAGCCCCGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGC  >  NC_002947/4794878‑4795168                                                                                                                                                 |                                                                                                                                                   ggttgcccagcgcttcagcgctgcagtcgccgccgccgtaggcagcgtttgacgccgcgctgcatgccactgtttgacgcggtcggcctgcaaggctggccgccaacccaagcgTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCtt                                                                                                                                                >  2:243384‑M1/115‑149 (MQ=255)           caagccCCGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCtt                                                                                                                                                >  5:29185/1‑139 (MQ=255)           caagccCCGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCtt                                                                                                                                                <  6:29185/139‑1 (MQ=255)            aagccCCGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTggcggc                                                                                                                                     >  1:54033/1‑149 (MQ=255)                 ccGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGcc                                                                                                                                >  8:90215/1‑149 (MQ=255)                  cGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCATGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCt                                                                                                                               >  3:170192/1‑149 (MQ=255)                       cGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCa                                                                                                                           <  6:135642/148‑1 (MQ=255)                        gggCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAgg                                                                                                                         >  3:98521/1‑149 (MQ=255)                                  aTCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTggcg                                                                                                                                       >  6:252843/1‑125 (MQ=255)                                  aTCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTggcg                                                                                                                                       <  5:252843/125‑1 (MQ=255)                                            gTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTgg                                                                                                     >  7:241027/1‑149 (MQ=255)                                               aaGCGCCCCGTTCGGGCATCAGTGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCAt                                                                                                  >  6:257463/1‑149 (MQ=255)                                                aGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCCGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATg                                                                                                 >  8:41363/1‑149 (MQ=255)                                                   gcCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAG                                                                                              >  4:20136‑M1/1‑149 (MQ=255)                                                    ccccGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGC                                                                                             >  2:190034‑M1/1‑149 (MQ=255)                                                                aTCAATGGCCGCGCCTTGATCCCGGCATGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAAc                                                                                 <  4:170192/149‑1 (MQ=255)                                                                aTCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAAc                                                                                 <  6:98634/149‑1 (MQ=255)                                                                 tCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg                                                                                >  8:6313/1‑149 (MQ=255)                                                                   aaTGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt                                                                              <  8:241027/149‑1 (MQ=255)                                                                         cgcgCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAc                                                                        <  1:190034/149‑1 (MQ=255)                                                                             ccTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcggcg                                                                    >  1:96958/1‑149 (MQ=255)                                                                                 gATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcggcggc                                                                  <  2:96958/147‑1 (MQ=255)                                                                                            gTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTc                                                                                     >  7:137446/1‑117 (MQ=255)                                                                                            gTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTc                                                                                     <  8:137446/117‑1 (MQ=255)                                                                                             tACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgc                                                    <  6:260111‑M2/149‑5 (MQ=255)                                                                                             tACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgc                                                    <  5:96220‑M2/149‑5 (MQ=255)                                                                                                acTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggcagcgtttgacgcc                                                        >  3:54335‑M1/1‑107 (MQ=255)                                                                                                acTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggcagcgtttgacgcc                                                        <  4:54335‑M1/142‑36 (MQ=255)                                                                                                 cTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgctg                                                  <  1:157506‑M2/147‑7 (MQ=255)                                                                                                  tCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAg                                               >  4:89355/1‑149 (MQ=255)                                                                                                    aTGTTTCGCTCTCCTTGTGGCCAGGCTCCGTAGTGACCGTCCACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGTCCGCTTCAAACAGTGGCATGCAGCGCtgcagtcgccgccgccgtaggacgcgtttgacgccgcgctgcatg                                              <  7:41363‑M1/148‑46 (MQ=255)                                                                                                       tttCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTg                                          <  5:257463/149‑1 (MQ=255)                                                                                                              aagcgtgtcgacggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAAcc                                   >  2:243384‑M2/36‑149 (MQ=255)                                                                                                                ccTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgct                                                   <  1:252848‑M2/131‑6 (MQ=255)                                                                                                                ccTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAgcgct                                                   >  2:252848‑M2/1‑126 (MQ=255)                                                                                                                 cTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCtc                                 <  7:90215/148‑1 (MQ=255)                                                                                                                       GCCAGGCTCCGTAGAGACCGTCGACACGCTTGAGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATc                          <  7:46211‑M1/149‑1 (MQ=255)                                                                                                                        ccAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcg                                                                       <  7:84480/103‑1 (MQ=255)                                                                                                                        ccAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTAcg                                                                       >  8:84480/1‑103 (MQ=255)                                                                                                                        acggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCt                         <  1:243384‑M2/124‑1 (MQ=255)                                                                                                                         cggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg                                                                                <  1:228318‑M2/69‑1 (MQ=255)                                                                                                                         cggtctctacggagcctggcgacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACg                                                                                >  2:228318‑M2/25‑93 (MQ=255)                                                                                                                            gCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTc                     <  8:46211/149‑1 (MQ=255)                                                                                                                                cGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCa                 <  2:54033/149‑1 (MQ=255)                                                                                                                                  tAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACt               <  7:6313/149‑1 (MQ=255)                                                                                                                                   agagACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACt               >  5:250226/1‑148 (MQ=255)                                                                                                                                     agaCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACtgat            <  5:260111/149‑1 (MQ=255)                                                                                                                                       aCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACtgatga          <  3:20136/149‑1 (MQ=255)                                                                                                                                       aCCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTCGGCAACCTCGTCGATCTGCTCGGCACtgatga          >  3:172708/1‑149 (MQ=255)                                                                                                                                         cGTCGACACGCTTGGGTTGGCGGCCAGCATTGCAGGCAGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATATGCTCGGCACTgatgat         >  2:150353/1‑148 (MQ=255)                                                                                                                                           tCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCaa      >  5:197822/1‑149 (MQ=255)                                                                                                                                             gacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt                                                                              <  7:72325‑M2/71‑1 (MQ=255)                                                                                                                                             gacaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCt                                                                              >  8:72325‑M2/5‑75 (MQ=255)                                                                                                                                              acaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTTAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcgg   <  4:171071‑M2/146‑1 (MQ=255)                                                                                                                                              acaCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcgg   <  4:98521‑M2/146‑1 (MQ=255)                                                                                                                                               caCGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAAcggc  >  2:240408‑M2/3‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TCCAGCAAGCCAAGCCCCGGTTCGGGCGCTTCGATCAGCAGCGGTAAAGCGCCCCGTTCGGGCATCAATGGCCGCGCCTTGATCCCGGCAAGTACACTCATGTTTCGCTCTCCTTGTCGCCAGGCTCCGTAGAGACCGTCGACACGCTTGGGTTGGCGGCCAGCCTTGCAGGCCGACCGCGTCAAACAGTGGCATGCAGCGCGGCGTCAAACGCTGCCTACGGCGGCGGCGACTGCAGCGCTGAAGCGCTGGGCAACCTCGTCGATCTGCTCGGCACTGATGATCAACGGC  >  NC_002947/4794878‑4795168

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.