New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5125087 =	30 (0.710)	4 (0.120)	4/206	NT	18.6%	intergenic (+61/‑121)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5125166 =	11 (0.330)					intergenic (+140/‑42)	PP_4511/PP_4512	AraC family transcriptional regulator/DMT superfamily permease

ACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCG  >  NC_002947/5125022‑5125313                                                                                                                                                 |                                                                                                                                                    ccgagggcggtgcggtggttcatggtgggtccttgatggagatctctacaggcagtgccggccctTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGc                                                                                                                                                 >  2:41662‑M1/66‑149 (MQ=255)     aCAGCTGTGTTGCTACATATTGTGTTGGCCTGTGGTTTTACACTTTGCCTTTGCCGGCCCGTTCGCGGGAAAACCCGCTCCTACTGGATGCCCCCGCCTTAATGTTTTGAAAACCCTTTTGGCGGGGTTTTACCCGCGAAAGGGCCgg                                                                                                                                              <  6:233342/148‑1 (MQ=255)                                gCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGCATGTTGTGCAAAACCTGTTGGAGCGGGTTTACCCGCGGAAGGGCCGGCCCTGCCTGTAGAGATGTCCATCAAGGa                                                                                                                  >  1:39007/1‑149 (MQ=38)                                              acTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCCCTCCAACAAGAAGCCCCCCCCGGAATTTTGTGCAAAAACTGTAGGATCGGGTTTAACCGCGAAATGGCCCGCACAGCCAGTATAGAAATCCATAAACGACCCACCAAAAaccc                                                                                                    >  6:250742/1‑148 (MQ=255)                                               atttgcctttgccGGGCCCTTCGCTGGTAAACGCGCTCCTACTGGATTCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAaccac                                                                                                   <  8:184726/148‑1 (MQ=38)                                                    cctttgccGGCCCCTTCGCGGTTAACCCCGCTCCTACAGGATCCCCCCGCCTTATTGTTGTGCAAAACCTTTAGGAGGGGTTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACcaccgca                                                                                               <  8:24222/148‑1 (MQ=38)                                                             gccctttcgcgggtaaacccgctcctacaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCgg                                                                                     >  2:41662‑M2/85‑149 (MQ=255)                                                                      CGGGTAACCCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAACCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGca                                                                            >  2:39007‑M1/1‑149 (MQ=255)                                                                      CGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGca                                                                            <  4:186093‑M1/149‑1 (MQ=255)                                                                            AACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATg                                                                                                         <  1:128351‑M1/114‑1 (MQ=255)                                                                            AACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATg                                                                                                         >  2:128351‑M1/1‑114 (MQ=255)                                                                            AACCCGCTCCTACAGGAGGCCCCCGCCTGAATGTTGTGCAAAACCTGAAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTg                                                                       >  5:216990‑M1/1‑148 (MQ=255)                                                                             ACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAgg                                                                                                                   <  5:247190‑M1/103‑1 (MQ=255)                                                                             ACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAgg                                                                                                                   >  6:247190‑M1/1‑103 (MQ=255)                                                                             ACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCAGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgc                                                                     <  8:66681‑M1/149‑1 (MQ=255)                                                                               CCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGgcgc                                                                   <  2:238758‑M1/149‑1 (MQ=255)                                                                                     CTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGt                                                              <  6:240305‑M1/148‑1 (MQ=255)                                                                                       acaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACccacca                                                                                                           >  8:131664‑M2/59‑101 (MQ=255)                                                                                       acaggttttgcacaacattcaggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACccacca                                                                                                           <  7:131664‑M2/43‑1 (MQ=255)                                                                                       ACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCATGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGttct                                                           <  5:61053‑M1/149‑1 (MQ=255)                                                                                          ggttttgcacaacattccggcgggggcatcctgtaggagcgggtttacccgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCg                                                        <  1:41662‑M2/94‑1 (MQ=255)                                                                                          GGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCATGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCg                                                        >  6:61053‑M1/1‑149 (MQ=255)                                                                                                ccccGGCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTa                                                  <  5:250742/149‑1 (MQ=255)                                                                                                  ccGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAcc                                                <  3:186093/149‑1 (MQ=255)                                                                                                  acGCCTGAATGTTGTGCAAAACCAGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTAcc                                                >  6:224669/2‑149 (MQ=255)                                                                                                      cTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGAAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCg                                            >  1:213019/1‑149 (MQ=255)                                                                                                             ttgtGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCg                                      <  2:213019/148‑1 (MQ=255)                                                                                                               gtgCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGc                                    >  2:229635/1‑148 (MQ=255)                                                                                                                   aaaaCCTGTAGGAGCGGGTTTACCTGCGAAAGGGCCGGCACTGCCTGTAGAGATATCCATAAAGGACCCACCATGAAACACCGCCCCGCCCTAGGCGCACTGCACACAGGCGCGCTGTTCTTCGGCCTTACCGGCGTCGTAGGCAAACt                               >  7:167107/1‑149 (MQ=38)                                                                                                                    aaaCCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTg                              <  1:238758/149‑1 (MQ=255)                                                                                                                                gcgggtttacccgcgaaAGGGCCGGCACTGACTGTAGAGATCTCCATCAAGGACCCACCATGAACAACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCCTCGCCAAACTGGCCAccagacc                   >  8:234203‑M2/18‑145 (MQ=255)                                                                                                                                           cgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGat       >  5:47718‑M2/7‑149 (MQ=255)                                                                                                                                           cgcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGat       >  8:134533‑M2/7‑149 (MQ=255)                                                                                                                                            gcgaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatc      <  5:240305‑M2/144‑1 (MQ=255)                                                                                                                                              gaaAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCCTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGatcat    <  7:234203‑M2/146‑1 (MQ=255)                                                                                                                                                aAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCg  <  7:66681‑M2/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                    ACTGACAGCAGTCTTGCGACAGAATGTGTTTGCCTGAGGCTTTACACTTTGCCTTTGCCGGCCCCTTCGCGGGTAAACCCGCTCCTACAGGATGCCCCCGCCTGAATGTTGTGCAAAACCTGTAGGAGCGGGTTTACCCGCGAAAGGGCCGGCACTGCCTGTAGAGATCTCCATCAAGGACCCACCATGAACCACCGCACCGCCCTCGGCGCACTGCACATTGGCGCGCTGTTCTTCGGCCTTACCGGCGTCTTCGGCAAACTGGCCACCAGCGCCAGCCCGGCGATCATCG  >  NC_002947/5125022‑5125313

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.