New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5513242 =	40 (0.950)	3 (0.090)	3/206	NT	8.5%	intergenic (+20/‑134)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein
	?	NC_002947	5513350 =	33 (0.980)					intergenic (+128/‑26)	urtD/urtE	ABC transporter ATP‑binding protein/ABC transporter ATP‑binding protein

GGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAC  >  NC_002947/5513204‑5513497                                                                                                                                                    |                                                                                                                                                    ggTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCggcacaggcaca                                                                                                                                                   <  2:192632/149‑1 (MQ=255)     tATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGTGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCAt                                                                                                                                               >  5:229286/1‑149 (MQ=255)         tGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGGTCCTTCAGTGGGCGGAATGGCATGGGGCGGTTCCCGTGGTAGGCGCGGGGTTACCC‑GCGAAGCGGCCGGCACAGGCACGGCCTCCCt                                                                                                                                           >  8:170641/1‑149 (MQ=255)           ggCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCttt                                                                                                                                         <  5:71365/149‑1 (MQ=255)                      ggATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                                                                                                              <  5:221897/149‑1 (MQ=255)                          ttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                                                                                                              <  2:184374/145‑1 (MQ=255)                          ttGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACtctc                                                                                                                              >  1:184374/1‑145 (MQ=255)                            gAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTCCAGGGGGCGTAATGCCATGGGGCGGTTCCCGTCGTCGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGc                                                                                                                                                 <  3:91994/124‑1 (MQ=255)                             aaTTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGc                                                                                                                        >  6:202411/1‑148 (MQ=255)                               tttttGGCGCCTGTGCCGGCCGCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGGCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAActct                                                                                                                               <  3:27923/139‑1 (MQ=255)                                        CCTGTGCCGGCCTCTGCGCGGGCAACCCCGTTCCTACCGGGGGCTTAATGCCCTGGGGCGGTTCCCGTCGTCGGAGCGGGTTAACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGaca                                                                                                            >  6:209293‑M1/1‑149 (MQ=255)                                               CGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCa                                                                                                     <  8:34885‑M1/149‑1 (MQ=255)                                                GGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCTTAATGCCATGGGGCTGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCAc                                                                                                    >  2:203828‑M1/1‑149 (MQ=255)                                                     tcttcgcgggtaaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAg                                                                                                 >  3:132052‑M2/96‑148 (MQ=255)                                                      TTCGCGGTTAACCCCGTTCCTACAGTGGGCGTAATGCCTTGGGGCGGTTCCCGTCGTAGTAGCGGTTTTACCC‑GCTAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGt                                                                                                >  2:190178‑M1/1‑147 (MQ=255)                                                          CGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcg                                                                                          >  5:202411‑M1/1‑149 (MQ=255)                                                           GGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcgg                                                                                         <  4:44264‑M1/149‑1 (MQ=255)                                                            GGTAACCCCGTTCCTACAGTGGGTGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcggc                                                                                        >  6:229286‑M1/1‑149 (MQ=255)                                                              gtaaacccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTAcggcg                                                                                       >  6:43681‑M2/87‑149 (MQ=255)                                                                 ccccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAg                                                                                   >  6:236094/1‑149 (MQ=255)                                                                  cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca                                                                                                                             <  7:6039/106‑1 (MQ=255)                                                                  cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTca                                                                                                                             >  8:6039/1‑106 (MQ=255)                                                                  cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAg                                                                                   >  3:80172/1‑148 (MQ=255)                                                                  cccGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAg                                                                                   <  4:80172/148‑1 (MQ=255)                                                                   cccgctcctacgacgggaaccgccccatggcattacgcccactgtaggaacggggttacccgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGc                                                                                  <  4:132052‑M2/68‑1 (MQ=255)                                                                         cTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCa                                                                                                                                       <  7:171953/89‑1 (MQ=255)                                                                         cTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCa                                                                                                                                       >  8:171953/1‑89 (MQ=255)                                                                         cTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATcc                                                                           >  5:270048/1‑149 (MQ=255)                                                                           cactggggCCTAATGCCAGGGGGGGGTTCCCGGCGGTCGTCGGGTTTTACCCGGCTAAGCGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCt                                                                          <  5:160527/144‑1 (MQ=255)                                                                           aCAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGGTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGtactac                                                                                           >  4:50707/1‑131 (MQ=255)                                                                           aCAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGCTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGtactac                                                                                           <  3:50707/131‑1 (MQ=255)                                                                            cAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTgc                                                                        >  2:37538/1‑149 (MQ=255)                                                                                 ggCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTcaca                                                                                                                           <  1:15127/93‑1 (MQ=255)                                                                                 ggCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTcaca                                                                                                                           >  2:15127/1‑93 (MQ=255)                                                                                       aTGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTcc                                                             >  4:212274/1‑149 (MQ=255)                                                                                           cATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTc                                                          >  8:163575/1‑148 (MQ=255)                                                                                               gggCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGc                                                     <  1:37538/149‑1 (MQ=255)                                                                                                   ggTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTc                                                              >  2:188706/1‑136 (MQ=255)                                                                                                   ggTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTc                                                              <  1:188706/136‑1 (MQ=255)                                                                                                      tCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGaa                                                       >  4:53964/1‑140 (MQ=255)                                                                                                      tCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGaa                                                       <  3:53964/140‑1 (MQ=255)                                                                                                         cgtcgtAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGc                                           >  3:8526/1‑149 (MQ=255)                                                                                                              tAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGt                                      <  3:44264/149‑1 (MQ=255)                                                                                                                 gAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAc                                   >  1:114574/1‑149 (MQ=255)                                                                                                                  aGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGAcc                                  >  4:209614/1‑149 (MQ=255)                                                                                                                               cgcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGc                      <  3:212274‑M2/128‑1 (MQ=255)                                                                                                                                gcgaagaggccggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGcc                     >  7:178345‑M2/21‑149 (MQ=255)                                                                                                                                          cggcacaggcACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGt           >  4:204066‑M2/11‑149 (MQ=255)                                                                                                                                                   cACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAc  <  2:114574‑M2/148‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                    GGTGTATCTGGGCCGCTGACCGGATTTGAATTTTTGGCGCCTGTGCCGGCCTCTTCGCGGGTAACCCCGTTCCTACAGTGGGCGTAATGCCATGGGGCGGTTCCCGTCGTAGGAGCGGGTTTACCC‑GCGAAGAGGCCGGCACAGGCACAGCATCCCTTTCAGGAACTCTCACATGCTCAAGATCGACACCCTGCACCAGTACTACGGCGGCAGCCACATCCTGCGCGGCCTGTCCTTCGAAGCCAAGATCGGCGAAGTGACCTGCCTGCTGGGCCGCAACGGCGTGGGCAAGAC  >  NC_002947/5513204‑5513497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.