New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5519825 =	30 (0.710)	5 (0.130)	5/238	NT	18.0%	intergenic (‑96/‑130)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease
	?	NC_002947	5519910 =	18 (0.460)					intergenic (‑181/‑45)	PP_4852/PP_4853	AraC family transcriptional regulator/DMT superfamily permease

AGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCG  >  NC_002947/5519765‑5520051                                                                                                                                                  |                                                                                                                                              aGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTg                                                                                                                                            <  6:265261/149‑1 (MQ=255)          ttGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCaatggggg                                                                                                                                   >  1:230898/1‑143 (MQ=255)          ttGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCaaa                                                                                                                                        <  2:230898/144‑1 (MQ=255)            gTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGcc                                                                                                                                  <  8:201104/148‑1 (MQ=255)                gcagcagggtacgcgctgggggctggaatggggctgccttgcaggCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCAtt                                                                                                                             >  1:10433‑M1/46‑149 (MQ=255)                  agacaCTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATGCCCCGTAGGGGCGGGGTGCCCCGCGCAGGGCTGCAAAGCAGcccccgtgc                                                                                                                           >  3:264879/1‑144 (MQ=255)                              ataCAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGa                                                                                                               <  3:134535/149‑1 (MQ=255)                                      cTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                          <  3:187849/130‑1 (MQ=255)                                      cTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCa                                                                                                                          >  4:187849/1‑130 (MQ=255)                                          aatggggctgctttgcagcccttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggCCTGCAAGGCAGCCCCATTCCAGCCCCCAGCGCGTACCCtgctgc                                                                                                   >  1:10433‑M2/105‑149 (MQ=255)                                           gAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCtgctgc                                                                                                   <  6:202005/148‑1 (MQ=255)                                                            gCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTcccc                                                                                 >  8:246258/1‑149 (MQ=255)                                                            gCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCGCCAGGCCTGTGTATCCCCCGTAGGAGCGGGGTCACCCGCGAAGGGCTGCCAAGCAGCCCCATTACCGCCCCCACCGAGGACCCTGCGGCAGGGACTGCCTGTTcccc                                                                                 >  4:35193/1‑149 (MQ=255)                                                              cttcgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCt                                                                               >  7:2304‑M2/85‑149 (MQ=255)                                                                 cgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTa                                                                                           >  8:226643‑M2/82‑134 (MQ=255)                                                                 cgcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggagcggggagcccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTa                                                                                           <  7:226643‑M2/53‑1 (MQ=255)                                                                  gcgggtgaacccgctcctacgggggatacacaggcctggaggctggcgcagatcctgtgggaggggggagcccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCAcc                                                                           <  8:2304‑M2/69‑1 (MQ=255)                                                                              cTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATc                                                               <  3:35193/149‑1 (MQ=255)                                                                                 ccACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACTCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCt                                                              <  3:243985/147‑1 (MQ=255)                                                                                  cacaGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGCGTACCCTGCGGCATGCACTACCTGTTCCCCCTCACCGCCATCCTCATCTggg                                                           >  7:251304/1‑149 (MQ=255)                                                                                   acaGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGc                                                          >  6:127678/1‑149 (MQ=255)                                                                                                    cTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCa                                         >  5:139368/1‑149 (MQ=255)                                                                                                          gCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTc                                                                                    >  8:237631/1‑100 (MQ=255)                                                                                                          gCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCACCCAGCGAGTACCCTGCTGCATGAACTACCTGTTc                                                                                    <  7:237631/100‑1 (MQ=255)                                                                                                                     ccccGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCACCCGCGAGTACCCTGCTGCATGAACTACCTGTGGCCCCTCACCGCCATCCTCATCTGGGCCGGCAACCCCGTGGTCCCCTAGATGGCCGCCGGt                        >  6:215275/1‑149 (MQ=38)                                                                                                                                         ccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGga       <  6:196003‑M2/137‑1 (MQ=255)                                                                                                                                         ccgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGga       >  5:196003‑M2/10‑146 (MQ=255)                                                                                                                                          cgcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATc   <  3:9246‑M2/141‑1 (MQ=255)                                                                                                                                           gcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCg  <  4:264879‑M2/142‑1 (MQ=255)                                                                                                                                           gcgaaggGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCg  <  7:246258‑M2/142‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                              AGTATAGGCTTGTAGACAGACACTCGATAATACAGGCCTATCGAGGACCTGCCTTGCAGGCCTTCGCGGGCTCCCCGCTCCCACAGGATCTGCGCCAGCCTCCAGGCCTGTGTATCCCCCGTAGGAGCGGGTTCACCCGCGAAGGGCTGCAAAGCAGCCCCATTCCAGCCCCCAGCGAGTACCCTGCTGCATGAACTACCTGTTCCCCCTCACCGCCATCCTCATCTGGGCCGGCAACACCGTGGTCACCAAGATGTCCGCCGGTGCCATCCACCCTGCGGAGATCG  >  NC_002947/5519765‑5520051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.