New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5888103	45 (1.070)	3 (0.070)	3/248	NT	7.0%	coding (157/567 nt)	maa	acetyltransferase
	?	NC_002947	= 5888130	37 (0.910)					coding (130/567 nt)	maa	acetyltransferase

ACGTCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTTGTGTTTTTCGCTGAGGGACATGG  >  NC_002947/5887982‑5888261                                                                                                                                                      |                                                                                                                                     acGTCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGtt                                                                                                                                      <  5:14566/149‑1 (MQ=255)  cGTCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTg                                                                                                                                     >  4:74938‑M2/1‑148 (MQ=255)  cGTCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCAGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTg                                                                                                                                     >  4:71194‑M2/1‑148 (MQ=255)    tCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgag                                                                                                                                   >  8:238310‑M2/1‑146 (MQ=255)    gcgAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgag                                                                                                                                   >  7:233683‑M2/2‑146 (MQ=255)      gAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgag                                                                                                                                   <  2:38517‑M2/147‑4 (MQ=255)         gATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGtt                                                                                                                             >  2:49595/1‑149 (MQ=255)              cGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGac                                                                                                                         >  2:127887/1‑148 (MQ=255)                   ttGAAGTTCATGAAAGTATTACGGCCAACGGTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACtgtt                                                                                                                   >  1:23670/1‑149 (MQ=255)                       aGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACtgttgttg                                                                                                               >  5:155304/1‑149 (MQ=255)                        gTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGaca                                                                                                                        >  4:262722/1‑139 (MQ=255)                        gTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGaca                                                                                                                        <  3:262722/139‑1 (MQ=255)                            aTGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCg                                                                                                          <  1:127887/149‑1 (MQ=255)                                aaGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATg                                                                                                       >  3:209304/1‑148 (MQ=255)                                     ttACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCa                                                                                                 <  4:109227/149‑1 (MQ=255)                                      tACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACtgttgtt                                                                                                                <  2:13779/133‑1 (MQ=255)                                      tACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACtgttgtt                                                                                                                >  1:13779/1‑133 (MQ=255)                                         ggCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTGAAGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTg                                                                                              <  1:183866/149‑1 (MQ=255)                                          gCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCt                                                                                            >  2:125555/1‑149 (MQ=255)                                               cGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCttgttg                                                                                       <  6:155304/149‑1 (MQ=255)                                               cGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCttgttg                                                                                       <  4:209304/149‑1 (MQ=255)                                                         gtAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGc                                                                              <  2:23670/148‑1 (MQ=255)                                                                  gTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTg                                                                      >  7:20023/1‑147 (MQ=255)                                                                          aGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAggg                                                            >  2:177830/1‑149 (MQ=255)                                                                           gAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAggg                                                            <  8:20023/148‑1 (MQ=255)                                                                            aaCGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGca                                                          <  1:125555/149‑1 (MQ=255)                                                                                 cgggcgAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGcagccag                                                     <  1:38517/149‑1 (MQ=255)                                                                                 cgggcgAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGcagccag                                                     >  8:15941/1‑149 (MQ=255)                                                                                    gcgAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATg                                                                                                       <  1:217793/96‑1 (MQ=255)                                                                                    gcgAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATg                                                                                                       >  2:217793/1‑96 (MQ=255)                                                                                     cgAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTgg                                                                                      <  8:107282/112‑1 (MQ=255)                                                                                        aTCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGCAGTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTgg                                                >  1:67004/1‑148 (MQ=255)                                                                                                  cTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCATCGTg                                                 <  1:102471/136‑1 (MQ=255)                                                                                                  cTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTg                                                 >  2:102471/1‑136 (MQ=255)                                                                                                   ttCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCgg                                   >  6:176742/1‑149 (MQ=255)                                                                                                       ccAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAg                               >  4:174991/1‑149 (MQ=255)                                                                                                        cAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAg                               >  6:195054/1‑148 (MQ=255)                                                                                                        cAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGc                              <  2:67004/149‑1 (MQ=255)                                                                                                        cAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGc                              <  1:177830/149‑1 (MQ=255)                                                                                                               gCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgagcactttggccaggttggcgaaggcgcggtgattcgcccgccgttctattgcgactacggctacaacatcagcgttggccgtaatactttcatgaacttcaactgcgt                        <  8:178488‑M2/149‑111 (MQ=255)                                                                                                               gCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGGTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTGCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCAtttt                         <  3:35732/147‑1 (MQ=255)                                                                                                                ccAAAGTGCTCCACAAGCAGCCGGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACTCTGTTGTTGTAGCGATGGATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTtgtg                      <  3:249672/149‑1 (MQ=255)                                                                                                                ccAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTtgtg                      <  1:49595/149‑1 (MQ=255)                                                                                                                 cAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgagcactttggccaggttggcgaaggcgcggtgattcgcccgccgttctattgcgactacggctacaacatcagcgttggccgtaatactttcat                                       >  4:246288‑M2/1‑37 (MQ=255)                                                                                                                 cAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTgagcactttggccaggttggcgaaggcgcggtgattcgcccgccgttctattgcgactacggctacaacatcagcgttggccgtaatactttcat                                       <  3:246288‑M2/132‑96 (MQ=255)                                                                                                                           cacaAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTTGTGTTTTTCGCt             >  2:40673/1‑147 (MQ=255)                                                                                                                                     ccGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTTGTGTTTTTCGCTGAGGGACATgg  >  2:64387/1‑148 (MQ=255)                                                                                                                                                      |                                                                                                                                     ACGTCGAGGATCACGCAGTTGAAGTTCATGAAAGTATTACGGCCAACGCTGATGTTGTAGCCGTAGTCGCAATAGAACGGCGGGCGAATCACCGCGCCTTCGCCAACCTGGCCAAAGTGCTCCACAAGCAGCCCGTGGC‑GTGCGTCGTTG‑AGCAGTTCGACACTGTTGTTGTAGCGATGCATCCAGTGCTTGTTGGCGATCTGCTCGGCCTGTAGTTCAGGGCAGCCAGCGTGGTAGAGCTGGCCGGTGAGCATTTTGTGTTTTTCGCTGAGGGACATGG  >  NC_002947/5887982‑5888261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.