New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6071622 =	32 (0.760)	5 (0.120)	5/246	NT	13.4%	intergenic (‑45/+57)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein
	?	NC_002947	6071671 =	34 (0.840)					intergenic (‑94/+8)	phoU/pstB‑II	phosphate transport‑associated protein/phosphate ABC transporter ATP‑binding protein

GCTCGGCGTTGAACTGCTGGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATCCGAAACACGCGCCGCTTGCTGCAT  >  NC_002947/6071523‑6071819                                                                                                                                                     |                                                                                                                                                     caaactggtcgaattcggggataccgataccctgttcaccaacccggcgaagaagcagaccgaagactacatcaccggtcgctacggctaagcgccgctCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGa                                                                                                                                                      >  1:159305‑M1/100‑149 (MQ=255)  aaactggtcgaattcggggataccgataccctgttcaccaacccggcgaagaagcagaccgaagactacatcaccggtcgctacggctaagcgccgctCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAg                                                                                                                                                     >  2:217641‑M1/99‑149 (MQ=255)    cGGCGTTGAACTGCTGGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAgcg                                                                                                                                                   <  4:165745/149‑1 (MQ=255)              ctgctgGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGcc                                                                                                                                         <  2:120653/149‑1 (MQ=255)                 ctgGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCg                                                                                                                                        >  1:115885/1‑147 (MQ=255)                 ctgGGAAATGTGATGGGTAAGGCTTGCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTa                                                                                                                                      <  7:54899/149‑1 (MQ=255)                  tgGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAg                                                                                                                                     >  1:147804/1‑149 (MQ=255)                                  tAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGAt                                                                                                                          >  7:213230/1‑144 (MQ=255)                                  tAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGAt                                                                                                                          <  8:213230/144‑1 (MQ=255)                                       ctttctttGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCg                                                                                                                >  6:113643/1‑149 (MQ=255)                                              tgttgATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGc                                                                                                          <  2:115885/148‑1 (MQ=255)                                              tgttgATCATCGTTTTGTCCTTTGGTACCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGc                                                                                                          <  7:74242/148‑1 (MQ=255)                                                     catcGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGc                                                                                                  >  1:133723/1‑149 (MQ=255)                                                       tcGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGc                                                                                                  <  2:26657/147‑1 (MQ=255)                                                       tcGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGc                                                                                                  >  1:26657/1‑147 (MQ=255)                                                               tCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGt                                                                                         <  2:133723/148‑1 (MQ=255)                                                                  tttGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGaa                                                                                      >  2:30681/1‑148 (MQ=255)                                                                  tttGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGaa                                                                                      >  3:43841/1‑148 (MQ=255)                                                                    tGGTAGCGCGGCGCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACa                                                                                    <  8:236350/148‑1 (MQ=255)                                                                    tGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACa                                                                                    <  4:43841/148‑1 (MQ=255)                                                                      gTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAgg                                                                                  <  2:16481/148‑1 (MQ=255)                                                                      gTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAgg                                                                                  <  1:30681/148‑1 (MQ=255)                                                                             ggCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGggtatcgg                                                                           >  3:90717/1‑148 (MQ=255)                                                                                         gCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTc                                                              >  5:90310/1‑149 (MQ=255)                                                                                                  ctcgcgaaacaggcaccttggtgtctggcaccggggttgccggtgttcgcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGttt                                                     >  2:217641‑M2/52‑149 (MQ=255)                                                                                                  cccGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGttt                                                     >  3:162651/1‑149 (MQ=255)                                                                                                   tcgcgaaacaggcaccttggtgtctggcaccggggttgccggtgttcgcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTg                                                    >  1:159305‑M2/51‑149 (MQ=255)                                                                                                   ccGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTg                                                    >  8:32627/1‑149 (MQ=255)                                                                                                   ccGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTg                                                    <  4:162651/149‑1 (MQ=255)                                                                                                   ccGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTg                                                    >  3:25936/1‑149 (MQ=255)                                                                                                    cgcgaaacaggcaccttggtgtctggcaccggggttgccggtgttcgcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGc                                                   >  1:138040‑M2/50‑149 (MQ=255)                                                                                                        AACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCAt                                               >  6:90310‑M1/1‑149 (MQ=255)                                                                                                             cGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACa                                          >  8:162330/1‑149 (MQ=255)                                                                                                                 aaCCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGggtatcggt                                                                          >  2:87480/1‑113 (MQ=255)                                                                                                                       ggTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGgt                                <  4:90717/149‑1 (MQ=255)                                                                                                                           ccAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCCTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTaa                            >  5:70822/1‑149 (MQ=255)                                                                                                                            cAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAAt                           >  3:242835/1‑149 (MQ=255)                                                                                                                             gcaccggggttgccggtgttcgcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTa                             <  2:138040‑M2/122‑1 (MQ=255)                                                                                                                             aGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATc                          <  5:113643/149‑1 (MQ=255)                                                                                                                                   cAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGt                                             >  7:23774/1‑124 (MQ=255)                                                                                                                                   cAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGt                                             <  8:23774/124‑1 (MQ=255)                                                                                                                                    aaGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATCCGAAaca                   >  7:4327/1‑149 (MQ=255)                                                                                                                                        gccggtgttcgcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATCCGAAACAcgc                <  1:217641‑M2/135‑1 (MQ=255)                                                                                                                                            tGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTAc                                           <  6:240722/117‑1 (MQ=255)                                                                                                                                            tGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTAc                                           >  5:240722/1‑117 (MQ=255)                                                                                                                                                  gcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGt                                                       >  6:179823‑M2/4‑99 (MQ=255)                                                                                                                                                  gcgAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGt                                                       <  5:179823‑M2/96‑1 (MQ=255)                                                                                                                                                     aGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATCCGAAACACGCGCCGCTTGCTGCAt  <  7:32627/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCTCGGCGTTGAACTGCTGGGAAATGTGATGGGTAAGGCTTTCTTTGTTGATCATCGTTTTGTCCTTTGGTAGCGCGGCCCTGTAGGAGCGGGTTCACCCGCGAACACCGGCAACCCCGGTGCCAGACACCAAGGTGCCTGTTTCGCGAGCGGCGCTTAGCCGTAGCGACCGGTGATGTAGTCTTCGGTCTGCTTCTTCGCCGGGTTGGTGAACAGGGTATCGGTATCCCCGAATTCGACCAGTTTGCCCATGTACATGAACGCGGTGTAATCCGAAACACGCGCCGCTTGCTGCAT  >  NC_002947/6071523‑6071819

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.