Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,307,341 | C→G | 10.5% | intergenic (‑90/+96) | recC ← / ← PP_5SG | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,307,341 | 0 | C | G | 10.5% | 163.7 / 10.1 | 57 | intergenic (‑90/+96) | recC/PP_5SG | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit/5S ribosomal RNA |
Reads supporting (aligned to +/- strand): ref base C (26/25); new base G (2/4); total (28/29) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.70e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.34e-01 |
GAGGCGGTTGCCGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGC > NC_002947/5307195‑5307488 | gAGGCGGTTGCCGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGcc < 2:249015/148‑1 (MQ=255) cGGTTGCCGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGcc < 2:20545/149‑1 (MQ=255) ggTTGCCGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGccc > 6:223489/1‑149 (MQ=255) ccGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTcc < 1:105730/149‑1 (MQ=255) ccGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTc < 8:200450/148‑1 (MQ=255) gTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGGCACGGCCGCTCCCg < 7:59060/149‑1 (MQ=255) tGGACGATCATGCAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGGCACGGCCGCTCCCGc < 5:200138/149‑1 (MQ=255) tCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGAtt > 2:231904/1‑149 (MQ=255) gAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTcgc > 7:10031/1‑148 (MQ=255) gAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTcgc < 8:10031/148‑1 (MQ=255) aaGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTcgcg < 5:223489/148‑1 (MQ=255) ccAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAgg > 5:160567/1‑149 (MQ=255) aGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTc < 2:242256/149‑1 (MQ=255) gggTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGt > 5:121080/1‑119 (MQ=255) gggTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGt < 6:121080/119‑1 (MQ=255) ggAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCTGGAGCGGCCGTGCCCTCTCCCGCAGCGATTCGCGCAGCTCGAGtt > 8:188214/1‑149 (MQ=255) aTGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGtttttt > 3:179441/1‑149 (MQ=255) gggCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTg < 8:203966/148‑1 (MQ=255) gCGGTGTTGATCATCGGAAGGTCTGTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACTTGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGccc < 7:188214/149‑1 (MQ=255) gAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGa < 4:179441/148‑1 (MQ=255) gCATCGTAAGGTCTCTGGAGGCGCTGATGGCGGATCGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACaa < 6:160567/149‑1 (MQ=255) gAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAACAGATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAAccc > 1:48937/1‑149 (MQ=255) gAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAAccc > 8:163290/1‑148 (MQ=255) ggTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTccc > 6:46505/1‑98 (MQ=255) ggTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTccc < 5:46505/98‑1 (MQ=255) gAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCtgcgtgc < 1:231904/149‑1 (MQ=255) gcTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCtgcgtgcg > 6:138254/1‑145 (MQ=255) aTGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAgg < 5:138254/149‑1 (MQ=255) tGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGttt > 1:186619/1‑149 (MQ=255) agGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGc > 3:136887/1‑148 (MQ=255) gggAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGa > 4:231214/1‑148 (MQ=255) aC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGGCACGGCCGCTCCCg > 1:127676/1‑67 (MQ=25) aC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGGCACGGCCGCTCCCg < 2:127676/67‑1 (MQ=25) c‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGaaa < 4:184339/145‑1 (MQ=255) c‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGaaa > 3:184339/1‑145 (MQ=255) gATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAgg > 2:12818/1‑132 (MQ=255) gATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAgg < 1:12818/132‑1 (MQ=255) gATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGaa > 8:151177/1‑148 (MQ=255) tCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCtt < 8:145979/148‑1 (MQ=255) tCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCtt > 2:40557/1‑148 (MQ=255) aCGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGAc < 3:231214/149‑1 (MQ=255) aCGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGAc < 2:48937/149‑1 (MQ=255) aaaCGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTAc > 2:270160/1‑148 (MQ=255) aCGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAg > 7:116552/1‑112 (MQ=255) aCGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAg < 8:116552/112‑1 (MQ=255) gCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGAc < 1:249886/139‑1 (MQ=255) gCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGAc > 2:249886/1‑139 (MQ=255) ccGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACaaa > 3:225828/1‑78 (MQ=255) ccGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACaaa < 4:225828/78‑1 (MQ=255) cATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAggg < 7:243262/102‑1 (MQ=255) cATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAggg > 8:243262/1‑102 (MQ=255) cAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAAt > 4:194909/1‑111 (MQ=255) cAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAAt < 3:194909/111‑1 (MQ=255) gggAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTAc > 8:114973/1‑149 (MQ=255) ggAGCGGGCACGGCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTa > 8:173216/1‑147 (MQ=255) ggAGCGGGCACGGCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTa < 7:173216/147‑1 (MQ=255) gCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATc < 4:136887/149‑1 (MQ=255) gCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGc > 8:6888/1‑149 (MQ=255) | GAGGCGGTTGCCGTGGACGATCATGAAGCCAGGGTGGAGATGGGCGGTGTTGAGCATCGGAAGGTCTCTGGAGGCGCTGATGGCTGAGAGGGGAAC‑GATATCACGCGTACATGAAACGGCCGAATGCCATCAGGCTGCGGGAGCGGCCGTGCCCGCTCCCGCAGCGATTCGCGCAGGTCGAGTTTTTTGCCCACAAAGACAAAACCCCTACCTGCGTGCGCAGATAGGGGTTTTGCGAAATGAATCTTGACGATGACCTACTCTCACATGGGGAAACCCCACACTACCATCGGC > NC_002947/5307195‑5307488 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |