Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,371,827 | C→T | 7.0% | C37Y (TGT→TAT) | carB ← | carbamoyl‑phosphate synthase large subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,371,827 | 0 | C | T | 7.0% | 169.5 / 2.4 | 57 | C37Y (TGT→TAT) | carB | carbamoyl‑phosphate synthase large subunit |
Reads supporting (aligned to +/- strand): ref base C (28/25); new base T (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
GCGCTCTTTCTCGATGATCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCTTTGAACAAT > NC_002947/5371682‑5371974 | gcgcTCTTTCTCGATGATCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAgg > 3:168922/1‑149 (MQ=255) tcGATGATCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGcc > 8:31479/1‑149 (MQ=255) gatCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGag > 3:49736/1‑148 (MQ=255) tCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGGCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCGTTACCGGCCTGGGCGCCGGagtag > 4:173266/1‑149 (MQ=255) ggCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTc < 4:30797/147‑1 (MQ=255) aCCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTATAGGCCTGGGCGCCGGAGTAGTCGAATTc > 8:158784/1‑149 (MQ=255) aCCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTATAGGCCTGGGCGCCGGAGTAGTCGAATTc > 2:258212/1‑149 (MQ=255) aCCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTc < 7:195785/149‑1 (MQ=255) gATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCa < 6:57913/149‑1 (MQ=255) cACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCAGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCGTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTg > 8:39743/1‑149 (MQ=255) cTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTATAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGc < 1:258212/149‑1 (MQ=255) cTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTATAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGc < 7:158784/149‑1 (MQ=255) aTCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGAt > 3:226005/1‑149 (MQ=255) tCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATc < 1:210990/149‑1 (MQ=255) gCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGa < 1:234226/126‑1 (MQ=255) gCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGa > 2:234226/1‑126 (MQ=255) gCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAAtt > 8:58900/1‑129 (MQ=255) gCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAAtt < 7:58900/129‑1 (MQ=255) tCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGAt > 8:97645/1‑149 (MQ=255) aTGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAATCCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCgg < 1:171940/149‑1 (MQ=255) aTGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGAt < 3:152812/140‑1 (MQ=255) aTGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGAt > 4:152812/1‑140 (MQ=255) aTGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCgg < 7:31479/149‑1 (MQ=255) tAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGc > 6:97903/1‑148 (MQ=255) aGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTc > 3:29033/1‑115 (MQ=255) aGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTc < 4:29033/115‑1 (MQ=255) aGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCa > 4:154641/1‑149 (MQ=255) ggTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAg > 4:107362/1‑149 (MQ=255) gTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAgc < 4:49736/149‑1 (MQ=255) gTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGcc > 1:11181/1‑147 (MQ=255) gTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCga < 7:134159/149‑1 (MQ=255) tCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGcc > 8:131361/1‑146 (MQ=255) aGCCATGGCCGGGTCGGTCATGATGGTGTCTGGGTTGGAGTTAACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATAACGATAGGGCCAGCGCCGATaa > 7:135119/1‑149 (MQ=255) ccATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGCCGAATTCTCAGACCTGGCCGATCACGATCGGGCCAGCGCCGAGAAt > 6:220149/1‑148 (MQ=255) gCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGa < 7:97645/148‑1 (MQ=255) gCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGa < 4:168922/148‑1 (MQ=255) gtcATGATGGAGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGGCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGAt < 2:225457/149‑1 (MQ=255) tcATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATg > 1:188084/1‑149 (MQ=255) tcATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATg > 7:217906/1‑149 (MQ=255) gatgGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGagt < 8:136538/80‑1 (MQ=255) gatgGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGagt > 7:136538/1‑80 (MQ=255) gCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGttt > 1:230367/1‑149 (MQ=255) ggTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTgg > 4:108710/1‑148 (MQ=255) ggAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCAtg < 3:108710/148‑1 (MQ=255) aGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCAtggtg < 2:188084/149‑1 (MQ=255) aGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCAtggtg > 3:81996/1‑149 (MQ=255) ttCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATggtggt < 2:230367/149‑1 (MQ=255) aGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTc > 3:132967/1‑148 (MQ=255) gATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCAAGGGCGCCGGAGTAGTCGAATTCGAAGGCCTGTCCGATCACGATCGGGCCAGCGCCGAGAATCAGGAGGCTTTAGAAGTCAGTACGTTTTGGCATGGTGGTCACTCaa > 4:260685/1‑148 (MQ=255) cgcgGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCgg < 4:132967/149‑1 (MQ=255) gcgGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCggg > 6:18475/1‑149 (MQ=255) cgcAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCg < 3:107362/149‑1 (MQ=255) gggCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCttt < 4:81996/149‑1 (MQ=255) ggCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTg > 1:116677/1‑104 (MQ=255) ggCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTg < 2:116677/104‑1 (MQ=255) cTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCTTTGaa < 4:226005/149‑1 (MQ=255) cTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCTTTGaa < 5:18475/149‑1 (MQ=255) cAGGCCTTGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCTTTGAACAAt < 3:154641/148‑1 (MQ=255) | GCGCTCTTTCTCGATGATCTTGGCCACCGATTGCCACTTGATCGGCTCGATGTAGGTGGCGTCAGCCATGGCCGGGTCGGTCATGATGGTGGCTGGGTTGGAGTTCACCAGGATGACGCGGAAACCTTCCTCGCGCAGGGCTTTACAGGCCTGGGCGCCGGAGTAGTCGAATTCGCAGGCCTGGCCGATCACGATCGGGCCAGCGCCGAGAATCAGGATGCTTTTGATGTCTGTACGTTTTGGCATGGTGGTCACTCAAATCCGGGGTCAGTCGGCAAGCCGCTTTGAACAAT > NC_002947/5371682‑5371974 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |