Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,615,630 | G→C | 9.8% | intergenic (‑109/+22) | hldE ← / ← msbA | bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,615,630 | 0 | G | C | 9.8% | 146.1 / 7.6 | 51 | intergenic (‑109/+22) | hldE/msbA | bifunctional heptose 7‑phosphate kinase/heptose 1‑phosphate adenylyltransferase/lipid A export ATP‑binding/permease MsbA |
Reads supporting (aligned to +/- strand): ref base G (25/21); new base C (3/2); total (28/23) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.99e-01 |
AACGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTGGTC > NC_002947/5615500‑5615768 | aaCGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGcccc < 4:141206/139‑1 (MQ=255) aaCGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGcccc > 3:141206/1‑139 (MQ=255) aaCGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAaggag < 1:69799/149‑1 (MQ=255) aaCGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAaggag > 2:41563/1‑149 (MQ=255) ggCATGGACATCTTCATTGGCAACCCATATTGAAATAATGAACAGGGGCAGTATTTTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCATCCCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGtt < 1:70144/149‑1 (MQ=255) ggACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGt > 7:39773/1‑148 (MQ=255) gACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCTCCGATCAAGGAGGGTTCAGGTg < 8:39773/148‑1 (MQ=255) gACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAagga > 1:227712/1‑137 (MQ=255) gACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAagga < 2:227712/137‑1 (MQ=255) ttCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCgg > 6:32496/1‑149 (MQ=255) tGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCtt > 4:36127/1‑149 (MQ=255) tGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGAAGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCtt > 4:198055/1‑149 (MQ=255) cAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGcc > 1:166915/1‑149 (MQ=255) gAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCa < 1:41563/148‑1 (MQ=255) ggggCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATg > 8:217640/1‑148 (MQ=255) gCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGc < 1:855/134‑1 (MQ=255) gCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGc > 2:855/1‑134 (MQ=255) aGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATaa < 5:32496/148‑1 (MQ=255) gCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATg > 1:125613/1‑149 (MQ=255) cacaGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATgg > 8:234606/1‑149 (MQ=255) acaGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAggg > 6:92013/1‑86 (MQ=255) acaGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAggg < 5:92013/86‑1 (MQ=255) ggTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCAt > 6:71856/1‑148 (MQ=255) gTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCa > 3:16063/1‑129 (MQ=255) gTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCa < 4:16063/129‑1 (MQ=255) gTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGcc < 2:125613/149‑1 (MQ=255) tCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAg < 7:155122/82‑1 (MQ=255) tCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCg > 1:74957/1‑149 (MQ=255) cAATGGCTTTATGGCCAGATCAT‑CCCAGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTCATATCGGCCTTGGCAGGCTCATCCAGCCCCATCGCATGCAAACGCGCATAAAGGCCATTAGCCg > 5:43165/1‑148 (MQ=255) tATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAagcagc < 7:217640/147‑1 (MQ=255) aTGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATa < 4:115718/124‑1 (MQ=255) aTGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATa > 3:115718/1‑124 (MQ=255) ggCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGgt > 5:67230/1‑149 (MQ=255) ccAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATgg < 5:218498/104‑1 (MQ=255) ccAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATgg > 6:218498/1‑104 (MQ=255) ccAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGgtgt < 7:234606/149‑1 (MQ=255) cAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGtgtg < 6:67230/149‑1 (MQ=255) tGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCt > 6:87301/1‑149 (MQ=255) gAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTc > 1:155448/1‑148 (MQ=255) ccGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGtgtg < 2:8370/128‑1 (MQ=255) ccGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGtgtg > 1:8370/1‑128 (MQ=255) ccGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAggcg < 6:158405/149‑1 (MQ=255) tccttgaTCGGGGCCGTCATGGCCTCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAggcggc > 5:276286/7‑149 (MQ=255) cttgaTCGGGGCCGTCATGGCCTCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAggcggc < 6:276286/143‑1 (MQ=255) ttgaTCGGGGCCGTCATGGCCTCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAggcgg > 7:82668/4‑145 (MQ=255) ttgaTCGGGGCCGTCATGGCCTCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAggcgg < 8:82668/142‑1 (MQ=255) aCAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCt < 5:179382/149‑1 (MQ=255) gaTCGGGGCCGTCATGGCCTCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTgg > 6:1220/2‑149 (MQ=255) aaTCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTgg < 3:36127/149‑1 (MQ=255) aaTCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCAAAACATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTgg > 1:218523/1‑149 (MQ=255) tCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAATCGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTGGTc > 3:142514/1‑149 (MQ=255) | AACGCGGCATGGACAACTTCATGGGCAACCCATATGGAAATAATGAACAGGGGCAGGATATTAGCACAGGGTAGTCAATGGCTTTATGGCCAGATCAT‑CCCTGGAAAATTCCCGTGACAATCGAGGCCATGACGGCCCCGATCAAGGAGGGTTCAGGTGATATCGGCCTTGGCCGGCTCATCCAGCCCCATGGCATGCAAACGGGCATAATGGCCATTAGCCGCAAGCAGCTCGGTGTGAGTACCGCGCTCGACCAGGCGGCCCTGGTC > NC_002947/5615500‑5615768 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |