Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,679,143 | A→C | 9.8% | I257L (ATC→CTC) | bioA → | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,679,143 | 0 | A | C | 9.8% | 112.8 / 5.1 | 41 | I257L (ATC→CTC) | bioA | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA |
Reads supporting (aligned to +/- strand): ref base A (17/20); new base C (2/2); total (19/22) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.56e-01 |
GCCGAACACCACGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGGTGTAC > NC_002947/5678999‑5679283 | gCCGAACACCACGCCTCGTTCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGGCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTGTTTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATc < 1:202498/148‑1 (MQ=255) gAACACCACGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGt > 4:222866/1‑149 (MQ=255) caccacGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGGCGATCTCGTCGTgga < 7:35130/149‑2 (MQ=255) ccacGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGCGGCCTGCGCCCGCTATGACGTGCACCTTATC‑CACGCCGAGATCGCCGTGGGCt > 7:173651/1‑149 (MQ=255) cacGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCtt < 3:222866/149‑1 (MQ=255) gCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCgg < 8:210182/149‑1 (MQ=255) cGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGTCGCACCGGCACGa > 7:205484/1‑149 (MQ=255) gTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGAt > 7:122550/1‑149 (MQ=255) ccGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGa < 6:61361/149‑1 (MQ=255) aTACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAg < 6:173137/148‑1 (MQ=255) cGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCATGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGcc > 8:154823/1‑149 (MQ=255) tGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc < 8:122550/149‑1 (MQ=255) tGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCATGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc < 7:154823/149‑1 (MQ=255) cATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGTCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCtgt < 8:205484/149‑1 (MQ=255) cATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCtgt < 2:222988/149‑1 (MQ=255) cATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCtgt < 3:153181/149‑1 (MQ=255) tGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGc < 5:174165/149‑1 (MQ=255) ccTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATCGCACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGTCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCt > 1:199253/1‑148 (MQ=255) cTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc < 8:101153/126‑1 (MQ=255) cTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc > 7:101153/1‑126 (MQ=255) tCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGc < 4:230017/142‑1 (MQ=255) tCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGc > 3:230017/1‑142 (MQ=255) gttg‑ttGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACcggcg > 7:249526/1‑149 (MQ=255) tgCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTAc > 7:92035/1‑149 (MQ=255) cgcgAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCt < 7:253834/149‑1 (MQ=255) cgAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGTCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGc < 2:199253/149‑1 (MQ=255) ccTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTg > 6:122276/1‑149 (MQ=255) gtGCGACCGCTATGACGTGCAGCTTATC‑CACGTCGAGATCGCCGTGGGCTTCTGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGcc < 4:122042/123‑1 (MQ=255) cTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGcc > 3:122042/1‑124 (MQ=255) aCGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGac > 4:143506/1‑148 (MQ=255) tGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGaccacc < 8:92035/149‑1 (MQ=255) ccTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCgcctgc > 3:263056/1‑136 (MQ=255) ccTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCgcctgc < 4:263056/136‑1 (MQ=255) gaagcc‑cACGGCGATCTCGTCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGAc > 4:199752/6‑147 (MQ=255) aTC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGgt > 4:157803/1‑149 (MQ=255) tC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGgt < 1:54814/148‑1 (MQ=255) cc‑cACGGCGATCTCGTCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCgcctgcct < 7:243652/132‑1 (MQ=255) cc‑cACGGCGATCTCGTCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCgcctgcct > 8:243652/2‑133 (MQ=255) gacgaGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGGTGTAc > 6:203775/1‑147 (MQ=255) cgaGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGgt > 2:79037/1‑141 (MQ=255) cgaGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGgt < 1:79037/141‑1 (MQ=255) aTCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc > 3:135469/1‑69 (MQ=255) aTCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTc < 4:135469/69‑1 (MQ=255) | GCCGAACACCACGCCTCGATCAGCGCCGTGATCGTCGAGCCGCTGATACAGGGTGCCGGTGGCATGCGCATGTACCACCCGGTGTACCTCAAGTTG‑TTGCGCGAGGCCTGCGACCGCTATGACGTGCACCTTATC‑CACGACGAGATCGCCGTGGGCTTCGGCCGCACCGGCACGATGTTCGCCTGCGAGCAAGCCGGCATCCGCCCGGATTTCCTGTGCCTGTCCAAGGCCCTGACCGGCGGCTACCTGCCGCTGGCCGCCTGCCTGACCACCGACAAGGTGTAC > NC_002947/5678999‑5679283 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |