Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,697,316 | G→C | 7.3% | intergenic (+26/‑51) | hslV → / → hslU | ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,697,316 | 0 | G | C | 7.3% | 161.1 / 3.9 | 55 | intergenic (+26/‑51) | hslV/hslU | ATP‑dependent HslVU protease peptidase subunit/protease HslVU ATPase subunit |
Reads supporting (aligned to +/- strand): ref base G (28/23); new base C (2/2); total (30/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.26e-01 |
CTGCTGAACAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGCCCTGCGCAACC > NC_002947/5697168‑5697463 | ctgctgAACAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCg < 7:36993/149‑1 (MQ=255) aaCAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAg > 5:161411/1‑149 (MQ=255) aaCAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAg > 2:2806/1‑149 (MQ=255) cAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGATCGCCAACCACAACCTGACCATCGAGTAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCTCCCCTTCCCGCTGAAggg > 8:77848/1‑149 (MQ=255) accgaccTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCtt < 6:161411/149‑1 (MQ=255) ccTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCa < 5:52907/149‑1 (MQ=255) tctcGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGACGGCGACATCTGCGTGTTAACCAAACACAAACTGACAATCGAGGAGCAGGAACTGGCCGAATGATTCATCTGTTCT‑GGCTCCCATTCCAGGTGAAGGGGCTTTTCCACg > 4:109031/1‑149 (MQ=255) gCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGAc > 1:5739/1‑149 (MQ=255) gcgAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCAc > 2:124959/1‑149 (MQ=255) gAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCt > 1:44080/1‑149 (MQ=255) aaTCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GCCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGc > 8:141745/1‑149 (MQ=255) gCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCTCGGCGCCCCTTCACCGGGAAGGGGcgcca < 1:16350/128‑5 (MQ=255) gCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCACCGGGAAGGGGcgcca > 2:16350/1‑123 (MQ=255) cGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAggg < 5:52618/113‑1 (MQ=255) cGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAggg > 6:52618/1‑113 (MQ=255) aaCATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATc < 7:72057/148‑1 (MQ=255) aTCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCg < 7:6541/137‑1 (MQ=255) aTCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCg > 8:6541/1‑137 (MQ=255) aTCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGt > 5:180904/1‑149 (MQ=255) cGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATc < 6:160423/143‑1 (MQ=255) cGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATc > 5:160423/1‑143 (MQ=255) gCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCa < 2:44080/149‑1 (MQ=255) aTCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCa > 2:152266/1‑140 (MQ=255) aTCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCa < 1:152266/140‑1 (MQ=255) cGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCga < 8:30051/148‑1 (MQ=255) ccaaccaCAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCa > 8:143776/1‑105 (MQ=255) ccTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAAc > 6:22193/1‑149 (MQ=255) ccATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCca < 8:89463/149‑1 (MQ=255) tCGAGGAGCAGGACCTGGCCGACTGATTCAGCTCTTCT‑GGCGCCCCTTCCCGGTGAAGGTGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCAcat < 7:77848/149‑1 (MQ=255) aggagCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCcgc < 5:269593/117‑1 (MQ=255) aggagCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCcgc > 6:269593/1‑117 (MQ=255) gCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACt < 8:209306/130‑1 (MQ=255) gCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGc > 7:103287/1‑149 (MQ=255) cAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGc > 2:217943/1‑64 (MQ=255) cAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGc < 1:217943/64‑1 (MQ=255) cAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCAt < 4:197386/102‑1 (MQ=255) cAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCAt > 3:197386/1‑102 (MQ=255) ggACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAg < 6:180904/149‑1 (MQ=255) cGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGc > 8:157725/1‑148 (MQ=255) aTTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAgcgc > 3:184820/1‑149 (MQ=255) ttCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAgcgcg > 2:149969/1‑149 (MQ=255) gCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAgg < 5:41911/130‑1 (MQ=255) gCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAgg > 6:45990/1‑130 (MQ=255) gCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAgg > 6:41911/1‑130 (MQ=255) gCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAgg < 5:45990/130‑1 (MQ=255) cTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTg < 2:5739/149‑1 (MQ=255) gTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTgg < 1:242456/148‑1 (MQ=255) gTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATAATTAAAATGAACCCCCCCGAGAAAGTACAAGAACAAAAACGCAAAATAAACGGACAGAACAACACCAAACGCGCCGTgg > 2:242456/1‑148 (MQ=255) ttCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTgg < 1:124959/147‑1 (MQ=255) gcgcCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTg < 7:157725/148‑1 (MQ=255) gcCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGcc > 1:101820/1‑148 (MQ=255) gcCCCTTCCCGGCGAAGGGGCTGTTCCACGCTGACTCACCTGCCCAACGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGcc < 2:101820/148‑1 (MQ=255) gcCCCTTCACCGGGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTg > 7:102548/1‑146 (MQ=255) gcCCCTTCACCGGGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTg < 8:102548/146‑1 (MQ=255) ccccTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGCCCt > 2:83914/1‑149 (MQ=255) cGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGCCCTGCGCAAcc > 3:216490/1‑149 (MQ=255) | CTGCTGAACAAGACCGACCTCTCGGCCCGCGAAATCGCCGAGACCGCCCTGAACATCGCCGGCGACATCTGCGTGTTCACCAACCACAACCTGACCATCGAGGAGCAGGACCTGGCCGACTGATTCAGCTGTTCT‑GGCGCCCCTTCCCGGTGAAGGGGCTTTTCCACGCTGACTCACCTGCCCAAGGACCGTATTGATCATGTCCATGACCCCCCGCGAGATCGTCCACGAACTCAACCGCCACATCATCGGCCAGGACGACGCCAAGCGCGCCGTGGCCATTGCCCTGCGCAACC > NC_002947/5697168‑5697463 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |