Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,725,658 | C→A | 10.2% | P436P (CCG→CCT) | opgH ← | glucans biosynthesis glucosyltransferase H |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,725,658 | 0 | C | A | 10.2% | 173.4 / 9.4 | 59 | P436P (CCG→CCT) | opgH | glucans biosynthesis glucosyltransferase H |
Reads supporting (aligned to +/- strand): ref base C (22/31); new base A (3/3); total (25/34) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 6.91e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.75e-01 |
GCTCGTCAAGCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTACACGCGGGTAGCGAACTGCTGCATGCGT > NC_002947/5725510‑5725802 | gCTCGTCAAGCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAAc > 8:88755/1‑149 (MQ=255) tCGTCAAGCAGGTTTGGCGGCAGTTCTTCGTAGCTACCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACgg > 5:101561/1‑149 (MQ=255) gTCAAGCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACGCACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGgcg > 8:253989/1‑149 (MQ=255) tCAAGCACGTTTGGCGGCAGTGCTTCGTATCTGACCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCTTCAGCGCAGCTTCGA‑CGAAGTCGTTGGAAAGGATTGCACCGGCGAACGCGCATTTTACCGTCAACGgcgc < 2:88322/149‑1 (MQ=255) aaGCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGgcgc > 7:151161/1‑147 (MQ=255) gCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAgg > 8:56766/1‑149 (MQ=255) aGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGgc < 1:174370/149‑1 (MQ=255) tttGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCa < 7:88755/149‑1 (MQ=255) tGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAg < 7:56766/148‑1 (MQ=255) cAGTTCTTCGTAGCTACCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGa < 6:101561/149‑1 (MQ=255) aGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGAt < 8:151161/149‑1 (MQ=255) ttcTTAGATGCACTGCAAGTCGTAGGCAATCTACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCGTTGCCGGGCAAAGgcgcgt < 6:94865/128‑3 (MQ=255) ttcGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACg > 8:238936/1‑149 (MQ=255) ttcGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCGTTGCCGGGCAAAGgcgcgt > 5:94865/1‑126 (MQ=255) gTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGc < 6:4391/148‑1 (MQ=255) gTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCt < 1:183004/149‑1 (MQ=255) gCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGGATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGc > 1:191652/1‑149 (MQ=255) gCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAgg < 6:126026/121‑1 (MQ=255) gCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAgg > 5:126026/1‑121 (MQ=255) cccGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGc < 2:219158/148‑1 (MQ=255) tCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGgatga < 7:65141/145‑1 (MQ=255) tCGTAGGCAATCCACACACCCCAGCCGGCACGGCCCATCAGCGCAGCTTCGA‑CGAACACCTGCGAAAGGATGGCACCGGCGAACCCGCCTTTGCCCGCCAACCGCGCCAGCGCGCAGAGCTCCATGAACGGCTTCATGCGgatgatac > 8:65141/1‑146 (MQ=255) gTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATcgc > 3:39401/1‑147 (MQ=255) gTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATcgc < 4:39401/147‑1 (MQ=255) tCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGt > 5:254409/1‑141 (MQ=255) tCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGt < 6:254409/141‑1 (MQ=255) ccccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTg < 5:45067/149‑1 (MQ=255) cccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAAc > 6:166120/1‑110 (MQ=255) cccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAAc < 5:166120/110‑1 (MQ=255) cccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATg > 4:81219/1‑119 (MQ=255) cccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATg < 3:81219/119‑1 (MQ=255) cccAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGc < 1:147797/149‑1 (MQ=255) cAGCCGGCACGGCGCATCAGCGCAGCTTCGAGCGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGc > 1:28868/1‑148 (MQ=255) gcgcATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACt < 5:140830/149‑1 (MQ=255) cacagcgcagcgTCGA‑CGAAGACGTCGGAACCGATGGCACCGGCGAACGCGCCTTTGCCCCGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGG‑CCCAGTAGTGCGACTCACCCAACTGCCAg < 8:114946/147‑1 (MQ=255) aTCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGc > 5:238550/1‑147 (MQ=255) ga‑ctaAGTCGTGTGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCgg < 7:241870/149‑1 (MQ=255) cgaAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCt < 5:171119/81‑1 (MQ=255) cgaAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCt > 6:171119/1‑81 (MQ=255) gaAGTCGGGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTGCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGAGTCACCCAACTGCCAGAAGAGCAGACCGGccg > 8:80717/1‑147 (MQ=255) gTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAAc < 7:201993/148‑1 (MQ=255) ggAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGt < 1:79328/148‑1 (MQ=255) ggAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTg < 6:238550/149‑1 (MQ=255) ggAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTg > 2:25244/1‑149 (MQ=255) ggAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTg > 2:62845/1‑149 (MQ=255) gAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGa > 8:254353/1‑107 (MQ=255) gAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGa < 7:254353/107‑1 (MQ=255) gAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCa > 4:121053/1‑130 (MQ=255) gAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCa < 3:121053/130‑1 (MQ=255) aaGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACACTGGGc < 7:238936/149‑1 (MQ=255) aTGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTa < 2:28868/149‑1 (MQ=255) tGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTa > 5:150902/1‑148 (MQ=255) ctggcgcCGTTGCCGGGCAAAGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCa < 1:92911/90‑1 (MQ=38) ctggcgcCGTTGCCGGGCAAAGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCa > 2:92911/4‑93 (MQ=38) aaCGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCAcc < 4:18048/95‑1 (MQ=255) aaCGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCAcc > 3:18048/1‑95 (MQ=255) gcgcCGTTGCCGGGCAAAGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCg < 3:111996/132‑1 (MQ=255) gcgcCGTTGCCGGGCAAAGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCg > 4:111996/1‑132 (MQ=255) ccGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTACACGCGGGTAGCGAACTGCTGCATg < 2:191652/149‑1 (MQ=255) gCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTACACGCGGGTAGCGAACTGCTGCATGCGt < 1:62845/149‑1 (MQ=255) | GCTCGTCAAGCAGGTTTGGCGGCAGTTCTTCGTAGCTGCCCGGCAAGTCGTAGGCAATCCACACACCCCAGCCGGCACGGCGCATCAGCGCAGCTTCGA‑CGAAGTCGTGGGAAAGGATGGCACCGGCGAACGCGCCTTTGCCCGGCAACGGCGCCAGGGCGCAGTGCTCGATGAACGGCTTCATGCGGATGATCGCGTTGTGGCCCCAGTAGTGCGACTCACCCAACTGCCAGAAGTGCAGACCGGCAGTGAACAGTGGGCCGTACACGCGGGTAGCGAACTGCTGCATGCGT > NC_002947/5725510‑5725802 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |