Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,794,207 G→A 7.4% G1231G (GGC→GGT gltB ← L‑glutamate synthase subunit alpha

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,794,2070GA 7.4% 158.1 / 2.3 54G1231G (GGC→GGTgltBL‑glutamate synthase subunit alpha
Reads supporting (aligned to +/- strand):  ref base G (24/26);  new base A (2/2);  total (26/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

ACCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGT  >  NC_002947/5794063‑5794355
                                                                                                                                                 |                                                                                                                                                    
acCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCAc                                                                                                                                                  >  7:181716/1‑149 (MQ=255)
   aaaGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCg                                                                                                                                               <  2:127032/149‑1 (MQ=255)
    aaGGTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCGGTGCAGGCGGGCGATTTCGCCGGCCACAGGCGCACCAATGGTGCGGTGGCAGTTGCAGATGTCGAGGCTGAAGTCACCACCGGc                                                                                                                                              >  7:222230/1‑149 (MQ=255)
    aaGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCACCACCCGc                                                                                                                                              >  7:222229/1‑149 (MQ=255)
          tGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTgg                                                                                                                                          <  8:79582/147‑1 (MQ=255)
              ccGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCg                                                                                                                                                      <  5:274272/131‑1 (MQ=255)
              ccGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCg                                                                                                                                                      >  6:274272/1‑131 (MQ=255)
                gCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGAt                                                                                                                                  <  8:181716/149‑1 (MQ=255)
                      cccTTGAAGCGGAAGGTGATCGGCGCCGGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCg                                                                                                                             >  1:148644/1‑149 (MQ=255)
                      cccTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCgg                                                                                                                            <  2:148644/149‑1 (MQ=255)
                       ccTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCgg                                                                                                                            >  3:113978/1‑148 (MQ=255)
                           gAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCAt                                                                                                                         <  6:31128/147‑1 (MQ=255)
                             aGCGCACGGCGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGAATTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCGGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc                                                                                                                     <  6:197573/149‑1 (MQ=255)
                              gCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCa                                                                                                                    <  1:134819/149‑1 (MQ=255)
                               gggAAGGTGATCGGCGCCGCGGCCATGCCCTTGTTGCCGTGCAGGCGTGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCat                                                                                                                   <  6:106700/148‑1 (MQ=255)
                                       gaccGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCa                                                                                                           >  3:29727/4‑149 (MQ=255)
                                         tCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCAtc                                                                                                         <  4:113978/149‑1 (MQ=255)
                                                          gCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGc                                                                                         >  5:92769/1‑149 (MQ=255)
                                                           cccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCa                                                                                                                          >  5:112340/1‑115 (MQ=255)
                                                           cccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCa                                                                                                                          <  6:112340/115‑1 (MQ=255)
                                                            ccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAAc                                                                                             >  2:128553/1‑143 (MQ=255)
                                                            ccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAAc                                                                                             <  1:128553/143‑1 (MQ=255)
                                                             cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc                                                                                                                     >  4:83056/1‑118 (MQ=255)
                                                             cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc                                                                                                                     <  3:83056/118‑1 (MQ=255)
                                                             cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc                                                                                        >  6:191626/1‑147 (MQ=255)
                                                                gTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGt                                                                                   >  6:145705/1‑149 (MQ=255)
                                                                        gCAGGCGGGCGATTTCGCCCGACACACCCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc                                                                           >  2:71044/1‑149 (MQ=255)
                                                                         cAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc                                                                           <  1:181727/148‑1 (MQ=255)
                                                                         cAGGCGGGCGATTTCGCCCGACACACCCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc                                                                           <  1:71044/148‑1 (MQ=255)
                                                                           ggcgggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGCGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCggg                                                                        <  4:157675/149‑1 (MQ=255)
                                                                           ggcgggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCggg                                                                        >  2:131699/1‑149 (MQ=255)
                                                                            tcgggcgAAATCGCCCGCCACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGt                                                                       >  8:17005/2‑149 (MQ=255)
                                                                              gggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTc                                                                     >  6:231495/1‑149 (MQ=255)
                                                                                   aaatCGCCCGCCACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc                                                                <  7:17005/146‑1 (MQ=255)
                                                                                   aTTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc                                                                <  4:29727/149‑1 (MQ=255)
                                                                                   aTTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc                                                                <  1:131326/149‑1 (MQ=255)
                                                                                        gCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACACCCCCAGGTCGAAAGGCGGGTTCTTGTCGACtt                                                           >  8:220251/1‑149 (MQ=255)
                                                                                            gACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCa                                                       <  5:145705/149‑1 (MQ=255)
                                                                                                    cgcACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCTGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCg                                               <  5:191626/149‑1 (MQ=255)
                                                                                                           aTGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc                                                                                        >  4:148002/1‑101 (MQ=255)
                                                                                                           aTGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc                                                                                        <  3:148002/101‑1 (MQ=255)
                                                                                                                    tCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAt                               >  4:164017/1‑149 (MQ=255)
                                                                                                                    tCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAt                               >  3:148198/1‑149 (MQ=255)
                                                                                                                      gCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgt                             >  3:197429/1‑149 (MQ=255)
                                                                                                                       cAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgtg                            >  4:56342/1‑149 (MQ=255)
                                                                                                                       cAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgtg                            <  7:220251/149‑1 (MQ=255)
                                                                                                                         gTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCg                          <  3:56342/149‑1 (MQ=255)
                                                                                                                              aGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTg                     >  2:33433/1‑149 (MQ=255)
                                                                                                                                  gTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGcc                   >  1:138659/1‑147 (MQ=255)
                                                                                                                                   tCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCca                 <  4:148198/148‑1 (MQ=255)
                                                                                                                                      aGGCTGAACTCACCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCcagcag             <  8:222229/149‑1 (MQ=255)
                                                                                                                                      aGGCCGAACTCACCACCCGCCTGGTCGCGGATGCCCTGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCcagcag             <  8:222230/149‑1 (MQ=255)
                                                                                                                                          tGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgt                             >  2:130728/1‑129 (MQ=255)
                                                                                                                                            aaCTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAgcggc         <  4:197429/147‑1 (MQ=255)
                                                                                                                                             aCTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGAc      <  1:33433/149‑1 (MQ=255)
                                                                                                                                               tCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAg    >  3:137337/1‑149 (MQ=255)
                                                                                                                                                 gCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGt  >  8:99118/1‑149 (MQ=255)
                                                                                                                                                 |                                                                                                                                                    
ACCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCCGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGT  >  NC_002947/5794063‑5794355

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: