Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,794,207 | G→A | 7.4% | G1231G (GGC→GGT) | gltB ← | L‑glutamate synthase subunit alpha |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,794,207 | 0 | G | A | 7.4% | 158.1 / 2.3 | 54 | G1231G (GGC→GGT) | gltB | L‑glutamate synthase subunit alpha |
Reads supporting (aligned to +/- strand): ref base G (24/26); new base A (2/2); total (26/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
ACCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGT > NC_002947/5794063‑5794355 | acCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCAc > 7:181716/1‑149 (MQ=255) aaaGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCg < 2:127032/149‑1 (MQ=255) aaGGTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCGGTGCAGGCGGGCGATTTCGCCGGCCACAGGCGCACCAATGGTGCGGTGGCAGTTGCAGATGTCGAGGCTGAAGTCACCACCGGc > 7:222230/1‑149 (MQ=255) aaGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCACCACCCGc > 7:222229/1‑149 (MQ=255) tGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTgg < 8:79582/147‑1 (MQ=255) ccGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCg < 5:274272/131‑1 (MQ=255) ccGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCg > 6:274272/1‑131 (MQ=255) gCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGAt < 8:181716/149‑1 (MQ=255) cccTTGAAGCGGAAGGTGATCGGCGCCGGCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCg > 1:148644/1‑149 (MQ=255) cccTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCgg < 2:148644/149‑1 (MQ=255) ccTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCgg > 3:113978/1‑148 (MQ=255) gAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCAt < 6:31128/147‑1 (MQ=255) aGCGCACGGCGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGAATTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCGGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc < 6:197573/149‑1 (MQ=255) gCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCa < 1:134819/149‑1 (MQ=255) gggAAGGTGATCGGCGCC‑GCGGCCATGCCCTTGTTGCCGTGCAGGCGTGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCat < 6:106700/148‑1 (MQ=255) gaccGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCa > 3:29727/4‑149 (MQ=255) tCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCAtc < 4:113978/149‑1 (MQ=255) gCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGc > 5:92769/1‑149 (MQ=255) cccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCa > 5:112340/1‑115 (MQ=255) cccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCa < 6:112340/115‑1 (MQ=255) ccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAAc > 2:128553/1‑143 (MQ=255) ccTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAAc < 1:128553/143‑1 (MQ=255) cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc > 4:83056/1‑118 (MQ=255) cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGcc < 3:83056/118‑1 (MQ=255) cTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc > 6:191626/1‑147 (MQ=255) gTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGt > 6:145705/1‑149 (MQ=255) gCAGGCGGGCGATTTCGCCCGACACACCCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc > 2:71044/1‑149 (MQ=255) cAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc < 1:181727/148‑1 (MQ=255) cAGGCGGGCGATTTCGCCCGACACACCCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAAcggc < 1:71044/148‑1 (MQ=255) ggcgggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGCGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCggg < 4:157675/149‑1 (MQ=255) ggcgggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCggg > 2:131699/1‑149 (MQ=255) tcgggcgAAATCGCCCGCCACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGt > 8:17005/2‑149 (MQ=255) gggcgATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTc > 6:231495/1‑149 (MQ=255) aaatCGCCCGCCACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc < 7:17005/146‑1 (MQ=255) aTTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc < 4:29727/149‑1 (MQ=255) aTTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTc < 1:131326/149‑1 (MQ=255) gCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACACCCCCAGGTCGAAAGGCGGGTTCTTGTCGACtt > 8:220251/1‑149 (MQ=255) gACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCa < 5:145705/149‑1 (MQ=255) cgcACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCTGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCg < 5:191626/149‑1 (MQ=255) aTGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc > 4:148002/1‑101 (MQ=255) aTGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGcc < 3:148002/101‑1 (MQ=255) tCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAt > 4:164017/1‑149 (MQ=255) tCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAt > 3:148198/1‑149 (MQ=255) gCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgt > 3:197429/1‑149 (MQ=255) cAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgtg > 4:56342/1‑149 (MQ=255) cAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgtg < 7:220251/149‑1 (MQ=255) gTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCg < 3:56342/149‑1 (MQ=255) aGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTg > 2:33433/1‑149 (MQ=255) gTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGcc > 1:138659/1‑147 (MQ=255) tCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCca < 4:148198/148‑1 (MQ=255) aGGCTGAACTCACCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCcagcag < 8:222229/149‑1 (MQ=255) aGGCCGAACTCACCACCCGCCTGGTCGCGGATGCCCTGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCcagcag < 8:222230/149‑1 (MQ=255) tGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAAtgt > 2:130728/1‑129 (MQ=255) aaCTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAgcggc < 4:197429/147‑1 (MQ=255) aCTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGAc < 1:33433/149‑1 (MQ=255) tCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAg > 3:137337/1‑149 (MQ=255) gCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGt > 8:99118/1‑149 (MQ=255) | ACCAAAGCTCTGGCCCGCAGTCCCCTTGAAGCGGAAGGTGATCGGCGCC‑GCGGCCATGCCCTGGTTGCCGTGCAGGCGGGCGATTTCGCCCGACACACGCGCACCAATGGAGCGGTCGCAGTTGCAGATGTCGAGGCTGAACTCGCCACCCGCCTGGTCGCGGATGGCCGGCATGGCCATATCAACCATCTTCTCGGCCAACTCGCCCAGGTCGAACGGCGGGTTCTTGTCGACTTCGCAGAACTGCGGTTTGTCCGCAGGAATGTGCGAGCTGCCCAGCAGCGGCGACAGGT > NC_002947/5794063‑5794355 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |