Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,821,897 | T→A | 6.4% | L173Q (CTG→CAG) | metW → | methionine biosynthesis protein MetW |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,821,897 | 0 | T | A | 6.4% | 185.5 / 2.2 | 62 | L173Q (CTG→CAG) | metW | methionine biosynthesis protein MetW |
Reads supporting (aligned to +/- strand): ref base T (28/30); new base A (2/2); total (30/32) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.67e-01 |
TGCCGCTGGTACCTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGACGCCCACCGGAGGAATC > NC_002947/5821749‑5822035 | tGCCGCTGGTACCTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCt > 4:185059/1‑149 (MQ=255) gTACCTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTc < 3:117964/148‑1 (MQ=255) ccTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGAcc < 7:83733/149‑1 (MQ=255) ccTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGAc < 3:192659/148‑1 (MQ=255) ccTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGAc < 7:244216/148‑1 (MQ=255) cAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCAcc < 3:185059/149‑1 (MQ=255) aaaGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCg > 2:222363/1‑149 (MQ=255) aaaGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGAACTCGACCGCCTGGCGGTCGACCACTTGCACCg > 2:114650/1‑149 (MQ=255) aGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCAGGCGGTCGa < 8:77601/135‑1 (MQ=255) aGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCAGGCGGTCGa > 7:239472/1‑135 (MQ=255) aGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCAGGCGGTCGa < 8:239472/135‑1 (MQ=255) aGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAACGTACTCGACCGCCAGGCGGTCGa > 7:77601/1‑135 (MQ=255) atcGCCTGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAAc < 1:96663/147‑1 (MQ=255) gCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAAc > 2:96663/1‑146 (MQ=255) aTGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtg < 7:33296/149‑1 (MQ=255) gCCTGTATCGGACTTCATGCGTTATACGTGGAACAACACGCCTAACATCCACTTCTGCACCTTCGCCGACTTCTAATAACTTGTGCACGACCGCCGGGCCATGGTACTCGACCGCCTGGGGGTCGACCACTTGCACCGCAACgggtg < 6:181319/147‑1 (MQ=255) cgggTAGCGGACTTCATGCCGAACACCTGATACAACCCGCCCAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAAGGCCGGGCCAAGGTAGTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtggg < 6:158393/146‑1 (MQ=255) cGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtggggt > 4:253549/1‑149 (MQ=255) cGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtgg > 1:50271/1‑146 (MQ=255) cGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtgg < 2:50271/146‑1 (MQ=255) cGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtg < 6:157024/145‑1 (MQ=255) cGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtg > 5:157024/1‑145 (MQ=255) tATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGc < 5:55288/149‑1 (MQ=255) ggACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGc < 5:70482/149‑1 (MQ=255) ggACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACATGCACCGCAACGTGAGGGGTGGCCgcc > 6:152649/1‑147 (MQ=255) cATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGc > 5:243735/1‑149 (MQ=255) aTGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATg < 7:94321/146‑1 (MQ=255) aTGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATg > 8:94321/1‑146 (MQ=255) aTGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGcc > 6:256381/1‑149 (MQ=255) aTGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGCCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCAATGGc > 7:45058/1‑148 (MQ=255) aTGCCGTATAACTGGTACAACACGCCGAACTTCCACTTCTGCTCCTTCGCCGTCTTCGATGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGAGCACTTGGACCGCAACGGGTGGGGTGGCCGGCTATGGcc < 8:45058/149‑1 (MQ=255) ataCCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtg < 5:275001/124‑1 (MQ=255) ataCCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACgggtg > 6:275001/1‑124 (MQ=255) ccTGGTACAAGACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGACGAAGTTGTGCACGAACGCGGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAAtcttct < 5:152649/148‑1 (MQ=255) ccTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTa < 7:211013/149‑1 (MQ=255) cTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAg > 7:107813/1‑149 (MQ=255) caacaCGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTgag > 7:240462/1‑148 (MQ=255) cGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGc < 1:114650/149‑1 (MQ=255) gCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGTTCGTCGGCAATGGCATaa > 2:82331/1‑129 (MQ=255) gCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCa > 3:80710/1‑149 (MQ=255) ttCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTcag > 4:74728/1‑149 (MQ=255) cACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTc > 1:4885/1‑149 (MQ=255) aCCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTcc > 3:98762/1‑149 (MQ=255) cTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTAt > 1:98402/1‑101 (MQ=255) cTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTAt < 2:98402/101‑1 (MQ=255) cTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCgg < 4:124064/149‑1 (MQ=255) cGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGc < 4:80710/149‑1 (MQ=255) gACTTCGAAGAACTTGGTCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCa < 6:189216/149‑1 (MQ=255) ttCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAaga < 2:4885/149‑1 (MQ=255) cGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTACAagag > 5:179394/1‑148 (MQ=255) gaaCTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCa < 5:256381/149‑1 (MQ=255) cACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCgg < 4:98762/148‑1 (MQ=255) cACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGt < 3:74728/149‑1 (MQ=255) aCGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTc > 5:64059/1‑149 (MQ=255) gAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTg > 2:166134/1‑149 (MQ=255) aCGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGCGTGGGGTGGCCGGCGCTGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGAc < 1:222363/149‑1 (MQ=255) cccAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGACGCCCAcc > 7:173735/2‑149 (MQ=255) aaGGTACTCGACCGCCTGGCGGTCGACCCCTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGCCGCCCACCg > 3:100789/1‑147 (MQ=255) tACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGACGCCCACCGGAGGaa < 8:107813/149‑1 (MQ=255) aCTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCgg > 4:46584/1‑128 (MQ=255) aCTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCgg < 3:46584/128‑1 (MQ=255) cTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGACGCCCACCGGAGGAATc > 3:211761/1‑149 (MQ=255) tCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGt > 7:27960/1‑91 (MQ=255) | TGCCGCTGGTACCTGGCGACCAAAGGCCGCATGCCGGTATCGGACTTCATGCCGTATACCTGGTACAACACGCCGAACATCCACTTCTGCACCTTCGCCGACTTCGAAGAACTTGTGCACGAACGCCGGGCCAAGGTACTCGACCGCCTGGCGGTCGACCACTTGCACCGCAACGGGTGGGGTGGCCGGCTATGGCCTAATCTTCTAGGTGAGATCGGCATCTACCGCGTCAGCAGTCCGGGCCTGCAAGAGCATCAGCTCGCGGTCTGACGCCCACCGGAGGAATC > NC_002947/5821749‑5822035 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |