Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,945,296 | G→A | 7.1% | L83F (CTT→TTT) | PP_5212 ← | iron‑sulfur‑binding oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,945,296 | 0 | G | A | 7.1% | 166.2 / 2.2 | 56 | L83F (CTT→TTT) | PP_5212 | iron‑sulfur‑binding oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (26/26); new base A (2/2); total (28/28) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.39e-01 |
CGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGC > NC_002947/5945148‑5945442 | cGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg < 5:15327/149‑1 (MQ=255) gTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg > 2:97825/1‑148 (MQ=255) tcatcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGCCAGATCGCCCAAGGCAAGcaca > 7:181488/1‑146 (MQ=255) atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGt < 3:105054/148‑1 (MQ=255) tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc > 3:2891/1‑149 (MQ=255) tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTcc > 8:174909/1‑149 (MQ=255) tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTcc > 4:246933/1‑149 (MQ=255) gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga < 4:230462/149‑1 (MQ=255) gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga < 2:56321/149‑1 (MQ=255) tATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag < 1:34135/149‑1 (MQ=255) tATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag > 5:29835/1‑149 (MQ=255) ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc < 2:82671/148‑1 (MQ=255) ccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTAGCCCAAGGCCAGCACACCGTCCCAGAGCAACACg > 1:160159/1‑149 (MQ=255) cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAg < 6:29835/149‑1 (MQ=255) cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTCCCAGAGCAACACGCAg < 7:174909/149‑1 (MQ=255) cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTCCCAGAGCAACACGCAg < 3:246933/149‑1 (MQ=255) tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc < 7:53447/149‑1 (MQ=255) tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc > 8:81450/1‑149 (MQ=255) ttGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGTAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCgg > 7:106609/1‑148 (MQ=255) ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCa > 7:193907/1‑128 (MQ=255) ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCa < 8:193907/128‑1 (MQ=255) ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAAt < 8:181488/149‑1 (MQ=255) cGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCa < 4:136988/135‑1 (MQ=255) cGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCa > 3:136988/1‑135 (MQ=255) gcgcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCacac > 3:199620/1‑92 (MQ=255) gcgcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCacac < 4:199620/92‑1 (MQ=255) gcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCa > 3:97898/1‑149 (MQ=255) ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag < 4:230711/96‑1 (MQ=255) ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag > 3:230711/1‑96 (MQ=255) ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGt > 8:20162/1‑132 (MQ=255) ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGt < 7:20162/132‑1 (MQ=255) gCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcg < 4:2891/149‑1 (MQ=255) aGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac > 4:243050/1‑131 (MQ=255) aGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac < 3:243050/131‑1 (MQ=255) ccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATc < 1:97825/149‑1 (MQ=255) gACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACt < 1:115625/139‑1 (MQ=255) gACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACt > 2:115625/1‑139 (MQ=255) cGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTgg < 5:30599/149‑1 (MQ=255) gTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGCGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGc > 7:173239/1‑149 (MQ=255) aCGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑Ac > 6:69041/1‑149 (MQ=255) tcactGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcgcg > 7:177825/1‑122 (MQ=255) tcactGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcgcg < 8:177825/122‑1 (MQ=255) actGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCtt > 6:215765/1‑149 (MQ=255) ctGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCtt > 4:236138/1‑148 (MQ=255) tGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTc > 4:53163/1‑148 (MQ=255) aCGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGTGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTcaa < 8:173239/148‑1 (MQ=255) cTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTcaaccaa < 2:19222/149‑1 (MQ=255) cTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTcaaccaa < 2:23424/149‑1 (MQ=255) aCGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCaacaac > 2:70774/1‑149 (MQ=255) cAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACgcgg < 3:236138/149‑1 (MQ=255) cgcACTGGTAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAAc < 8:106609/149‑1 (MQ=255) tGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATgg > 3:131615/1‑148 (MQ=255) gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATg > 4:79075/1‑142 (MQ=255) gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATg < 3:79075/142‑1 (MQ=255) gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTg > 2:148141/1‑149 (MQ=255) cccAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCAtt > 5:100187/1‑149 (MQ=255) aaGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGACACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAg < 1:70774/149‑1 (MQ=255) aaGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGc > 5:103787/1‑149 (MQ=255) | CGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGA‑ACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGC > NC_002947/5945148‑5945442 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |