Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 5,945,296 G→A 7.1% L83F (CTT→TTT)  PP_5212 ← iron‑sulfur‑binding oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,945,2960GA 7.1% 166.2 / 2.2 56L83F (CTT→TTT) PP_5212iron‑sulfur‑binding oxidoreductase
Reads supporting (aligned to +/- strand):  ref base G (26/26);  new base A (2/2);  total (28/28)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.39e-01

CGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGC  >  NC_002947/5945148‑5945442
                                                                                                                                                    |                                                                                                                                                   
cGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg                                                                                                                                                     <  5:15327/149‑1 (MQ=255)
 gTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAg                                                                                                                                                     >  2:97825/1‑148 (MQ=255)
       tcatcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGCCAGATCGCCCAAGGCAAGcaca                                                                                                                                                 >  7:181488/1‑146 (MQ=255)
         atcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGt                                                                                                                                             <  3:105054/148‑1 (MQ=255)
          tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTcc                                                                                                                                           >  3:2891/1‑149 (MQ=255)
          tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTcc                                                                                                                                           >  8:174909/1‑149 (MQ=255)
          tcaGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTcc                                                                                                                                           >  4:246933/1‑149 (MQ=255)
              gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                                                                                                                                       <  4:230462/149‑1 (MQ=255)
              gTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCaga                                                                                                                                       <  2:56321/149‑1 (MQ=255)
               tATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                                                                                                                      <  1:34135/149‑1 (MQ=255)
               tATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                                                                                                                      >  5:29835/1‑149 (MQ=255)
                 ttGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGc                                                                                                                                     <  2:82671/148‑1 (MQ=255)
                      ccGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTAGCCCAAGGCCAGCACACCGTCCCAGAGCAACACg                                                                                                                               >  1:160159/1‑149 (MQ=255)
                         cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAg                                                                                                                            <  6:29835/149‑1 (MQ=255)
                         cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTCCCAGAGCAACACGCAg                                                                                                                            <  7:174909/149‑1 (MQ=255)
                         cgTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAACACACCGTCCCAGAGCAACACGCAg                                                                                                                            <  3:246933/149‑1 (MQ=255)
                              tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc                                                                                                                       <  7:53447/149‑1 (MQ=255)
                              tAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGtcctc                                                                                                                       >  8:81450/1‑149 (MQ=255)
                                          ttGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGTAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCgg                                                                                                            >  7:106609/1‑148 (MQ=255)
                                             ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCa                                                                                                                             >  7:193907/1‑128 (MQ=255)
                                             ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCa                                                                                                                             <  8:193907/128‑1 (MQ=255)
                                             ccGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAAt                                                                                                        <  8:181488/149‑1 (MQ=255)
                                              cGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCa                                                                                                                     <  4:136988/135‑1 (MQ=255)
                                              cGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCa                                                                                                                     >  3:136988/1‑135 (MQ=255)
                                                              gcgcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCacac                                                                                                                                                >  3:199620/1‑92 (MQ=255)
                                                              gcgcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCacac                                                                                                                                                <  4:199620/92‑1 (MQ=255)
                                                                gcacCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCa                                                                                     >  3:97898/1‑149 (MQ=255)
                                                                    ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                                                                                                                      <  4:230711/96‑1 (MQ=255)
                                                                    ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCagag                                                                                                                                      >  3:230711/1‑96 (MQ=255)
                                                                    ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGt                                                                                                  >  8:20162/1‑132 (MQ=255)
                                                                    ccGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGt                                                                                                  <  7:20162/132‑1 (MQ=255)
                                                                      gCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcg                                                                               <  4:2891/149‑1 (MQ=255)
                                                                         aGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac                                                                                              >  4:243050/1‑131 (MQ=255)
                                                                         aGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGaac                                                                                              <  3:243050/131‑1 (MQ=255)
                                                                                    ccgACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATc                                                                 <  1:97825/149‑1 (MQ=255)
                                                                                      gACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACt                                                                         <  1:115625/139‑1 (MQ=255)
                                                                                      gACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACt                                                                         >  2:115625/1‑139 (MQ=255)
                                                                                        cGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTgg                                                             <  5:30599/149‑1 (MQ=255)
                                                                                         gTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGCGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGc                                                            >  7:173239/1‑149 (MQ=255)
                                                                                             aCGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAAc                                                       >  6:69041/1‑149 (MQ=255)
                                                                                                   tcactGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcgcg                                                                             >  7:177825/1‑122 (MQ=255)
                                                                                                   tcactGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTcgcg                                                                             <  8:177825/122‑1 (MQ=255)
                                                                                                     actGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCtt                                               >  6:215765/1‑149 (MQ=255)
                                                                                                      ctGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCtt                                               >  4:236138/1‑148 (MQ=255)
                                                                                                       tGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTc                                              >  4:53163/1‑148 (MQ=255)
                                                                                                         aCGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGTGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTcaa                                            <  8:173239/148‑1 (MQ=255)
                                                                                                            cTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTcaaccaa                                        <  2:19222/149‑1 (MQ=255)
                                                                                                            cTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTcaaccaa                                        <  2:23424/149‑1 (MQ=255)
                                                                                                                aCGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCaacaac                                    >  2:70774/1‑149 (MQ=255)
                                                                                                                    cAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACgcgg                                <  3:236138/149‑1 (MQ=255)
                                                                                                                           cgcACTGGTAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAAc                         <  8:106609/149‑1 (MQ=255)
                                                                                                                                tGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATgg                     >  3:131615/1‑148 (MQ=255)
                                                                                                                                     gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATg                      >  4:79075/1‑142 (MQ=255)
                                                                                                                                     gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATg                      <  3:79075/142‑1 (MQ=255)
                                                                                                                                     gTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTg               >  2:148141/1‑149 (MQ=255)
                                                                                                                                          cccAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCAtt          >  5:100187/1‑149 (MQ=255)
                                                                                                                                                  aaGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGACACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAg   <  1:70774/149‑1 (MQ=255)
                                                                                                                                                  aaGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGc  >  5:103787/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
CGTTCGATCATCAGGTATTGCCCCGCGTGGTAGCGCAGAGGCTTGCCGGCAGGCGCACGCAGGCGCACCCGCCAGACGTCGCCGCCGACGTCGACGCACTCACTGACGCTGCACGCCAGCTTGCGCACTGGCAGTTCGCCCAAGGCAAGCACACCGTCCCAGAGCAACACGCAGTCCTCCAGCGGTTCGGCAATGCAGGTGAACAACTCGCCATGGTCGCGGACTTCGCCATCCTGGCGAACCCGCCCTTCAACCAACAACGCGGCGCAAACATGGCAATTGCCATTGCGGCAGC  >  NC_002947/5945148‑5945442

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: