Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 6,016,723 | C→A | 9.8% | intergenic (‑39/+188) | PP_5728 ← / ← PP_5267 | rhs repeat‑associated core domain‑containing protein/cytochrome c5 |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 6,016,723 | 0 | C | A | 9.8% | 157.7 / 6.6 | 51 | intergenic (‑39/+188) | PP_5728/PP_5267 | rhs repeat‑associated core domain‑containing protein/cytochrome c5 |
Reads supporting (aligned to +/- strand): ref base C (23/23); new base A (3/2); total (26/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.66e-01 |
AGGCGAATAGGCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAA > NC_002947/6016583‑6016869 | aGGCGAATAGGCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTATCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCt < 5:3637/149‑1 (MQ=255) ggCGAATAGGCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCt > 2:21305/1‑148 (MQ=255) aTAGGCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGTAGCGTCAGTGTTCTTCAGAACCCTGaaaaa < 1:24059/149‑1 (MQ=255) gCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATTGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGa < 2:52689/149‑1 (MQ=255) ccAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGCGTTCTTCAGAACCCTGAAAAATAGaa < 5:243952/149‑1 (MQ=255) tGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGt < 8:27092/149‑1 (MQ=255) gCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGt > 4:228229/1‑148 (MQ=255) cGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGGGTTCTGAAGAACACTGacgctt < 5:189471/137‑6 (MQ=255) cGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGGGTTCTGAAGAACACTGacgctt > 6:189471/1‑132 (MQ=255) tggATCAGCTTTTGCGTCTGTGTTCGTCCGGCTGCATGTTTCTCGGGACAGTTATCGCCCAGTTCCATTGTTATCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACACTGTAAAATAGATCTTTTAAAAATGGTATTTCTCAt < 8:188138/148‑1 (MQ=255) gATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATgg < 5:75034/149‑1 (MQ=255) tCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGGCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGaa < 3:45221/149‑1 (MQ=255) gcgtttGCTGCTGTGTTCGACCTTCTTCATGTTGCTCGGGACAGTTATCGCACAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATATAACTTGTAAAAATGCTAGTTCTCATGGAATCa < 4:162413/146‑1 (MQ=255) ggCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGc > 7:225188/1‑149 (MQ=255) ggCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGc < 3:228229/149‑1 (MQ=255) ggCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGc > 4:196728/1‑149 (MQ=255) gCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGGGTTCTGAAGAACACTGac < 3:196975/102‑2 (MQ=255) gCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGGGTTCTGAAGAACACTGac > 4:196975/1‑101 (MQ=255) ttCGACCGACTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTg > 4:179154/1‑149 (MQ=255) gCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCt > 1:204545/1‑149 (MQ=255) cTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTg < 5:246161/149‑1 (MQ=255) gCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACGCTGAAAAATAGaa < 6:24918/93‑1 (MQ=255) gCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGaa > 5:24918/1‑93 (MQ=255) gCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTg > 8:134534/1‑147 (MQ=255) cATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGga < 6:246058/148‑1 (MQ=255) aTGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGgag > 4:42715/1‑148 (MQ=255) gTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTCGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACa > 6:227720/1‑149 (MQ=255) ttGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACa < 4:165601/148‑1 (MQ=255) ttGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTCGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACAt < 5:227720/149‑1 (MQ=255) tCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCAt > 4:109892/1‑149 (MQ=255) gggACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCAt < 3:237308/147‑1 (MQ=255) gACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa > 6:58728/1‑148 (MQ=255) ttATCGCCCAGATACATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCAATGGACATgg > 2:71000/1‑148 (MQ=255) aTCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGctc > 5:172747/1‑149 (MQ=255) gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTa < 8:225188/148‑1 (MQ=255) tCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg < 3:42715/149‑1 (MQ=255) ccATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttgg > 4:68892/1‑149 (MQ=255) caccacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCt > 3:146018/1‑149 (MQ=255) accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTg > 2:185440/1‑149 (MQ=255) accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAACGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTg > 7:28203/1‑149 (MQ=255) cacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGa < 3:196728/149‑1 (MQ=255) ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCt > 2:250523/1‑149 (MQ=255) ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCt > 3:111696/1‑149 (MQ=255) cAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCAt < 6:53863/108‑1 (MQ=255) cAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCAt > 5:53863/1‑108 (MQ=255) gAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCggg > 3:5333/1‑149 (MQ=255) aGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGca < 3:68892/149‑1 (MQ=255) ttCAGGGTTCTGAAGAACACTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCAATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGcacca > 6:161463/2‑149 (MQ=255) tCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGcaccac < 4:111696/149‑1 (MQ=255) aGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGca > 3:201114/1‑143 (MQ=255) aGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGca < 4:201114/143‑1 (MQ=255) cttcAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCtgtg < 7:242612/119‑1 (MQ=255) cttcAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCtgtg > 8:242612/1‑119 (MQ=255) ttcAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACaaa < 2:204545/149‑1 (MQ=255) ttcAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACa > 4:214611/1‑147 (MQ=255) | AGGCGAATAGGCCAGATGCCGAAGGGCGCTGCCGGGGATCAGCTTTTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGTAAAAATGCTAGTTCTCATGGAATCAGGCTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAA > NC_002947/6016583‑6016869 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |