Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,056,583 C→T 100% S237F (TCC→TTC)  oxyR → oxidative and nitrosative stress transcriptional dual regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,056,5830CT97.7% 141.8 / ‑4.3 44S237F (TCC→TTC) oxyRoxidative and nitrosative stress transcriptional dual regulator
Reads supporting (aligned to +/- strand):  ref base C (0/1);  new base T (21/22);  total (21/23)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.74e-01
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAG  >  NC_002947/6056437‑6056728
                                                                                                                                                   |                                                                                                                                                 
cAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCg                                                                                                                                                 <  1:269965/149‑1 (MQ=255)
cAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCg                                                                                                                                                 >  4:12980/1‑149 (MQ=255)
cAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCg                                                                                                                                                 <  6:145305/149‑1 (MQ=255)
   gagCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGcc                                                                                                                                              >  5:250320/1‑149 (MQ=255)
      ccTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTg                                                                                                                                           >  2:183415/1‑149 (MQ=255)
          ttGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGc                                                                                                                                         <  8:18298/147‑1 (MQ=255)
          ttGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGc                                                                                                                                         <  2:21928/147‑1 (MQ=255)
             ctgctTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATc                                                                                                                                    <  4:250963/149‑1 (MQ=255)
               gctTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTg                                                                                                                                           <  8:34395/140‑1 (MQ=255)
               gctTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTg                                                                                                                                           >  7:34395/1‑140 (MQ=255)
                           ccACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGt                                                                                                                      >  3:38888/1‑149 (MQ=255)
                            cACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTc                                                                                                                     <  4:174496/149‑1 (MQ=255)
                            cACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTc                                                                                                                     >  5:100253/1‑149 (MQ=255)
                                  ttCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTGCAAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAg                                                                                                                >  1:63681/1‑149 (MQ=255)
                                  ttCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGc                                                                                                                                         >  8:123984/1‑123 (MQ=255)
                                  ttCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGc                                                                                                                                         <  7:123984/123‑1 (MQ=255)
                                         aCCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGt                                                                                                               >  6:46762/1‑142 (MQ=255)
                                         aCCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGt                                                                                                               <  5:46762/142‑1 (MQ=255)
                                                       gCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGcccc                                                                                          >  4:91918/1‑149 (MQ=255)
                                                              cTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTc                                                                                   <  1:183415/149‑1 (MQ=255)
                                                                  ccTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATc                                                                                >  7:95186/1‑148 (MQ=255)
                                                                      aaCAAGGGGGGTG‑AATGATCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGt                                                                           <  2:22402/149‑1 (MQ=255)
                                                                      aaCAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCa                                                                                                                 <  7:152116/111‑1 (MQ=255)
                                                                      aaCAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCa                                                                                                                 >  8:152116/1‑111 (MQ=255)
                                                                      aaCAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGt                                                                           <  4:163185/149‑1 (MQ=255)
                                                                          aGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTgcgc                                                                       <  8:95186/149‑1 (MQ=255)
                                                                                    aaGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcg                                                              >  7:83713/1‑149 (MQ=255)
                                                                                    aaGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAc                                                               <  3:12980/148‑1 (MQ=255)
                                                                                      ggCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGaa                                                                             <  2:238137/132‑1 (MQ=255)
                                                                                      ggCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGaa                                                                             >  1:238137/1‑132 (MQ=255)
                                                                                                             gTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAg                                     <  4:108905/149‑1 (MQ=255)
                                                                                                              tCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGc                                    <  2:63681/149‑1 (MQ=255)
                                                                                                                cAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccggcac                                                    >  4:117580/1‑131 (MQ=255)
                                                                                                                cAGCTCACTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGAcggcaccggcac                                                    <  3:117580/131‑1 (MQ=255)
                                                                                                                       cTGGAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTg                           >  8:85060/1‑149 (MQ=255)
                                                                                                                          gAAACCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGgcg                        >  3:189783/1‑149 (MQ=255)
                                                                                                                             aCCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTgcgc                                                                       <  2:64919/99‑1 (MQ=255)
                                                                                                                             aCCATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTgcgc                                                                       >  1:64919/1‑99 (MQ=255)
                                                                                                                              ccATCCGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGcc                    <  6:250320/149‑1 (MQ=255)
                                                                                                                                   cGTCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCt                <  7:85060/148‑1 (MQ=255)
                                                                                                                                     tCACATGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTcc             >  1:233139/1‑149 (MQ=255)
                                                                                                                                       acaTGGTGGCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCcg           >  6:16945/1‑149 (MQ=255)
                                                                                                                                            gtggCTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGc       >  8:89516/1‑148 (MQ=255)
                                                                                                                                                cTTTCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAg  <  8:83713/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                 
CAAGAGCCTGTTGCTGCTTGGTGAGGGCCACTGCTTCCGTGACCAGGTACTGGAAGCCTGCCCTACCCTGAACAAGGGGGGTG‑AAGGCTCAAGGCACACCACGGTCGAGTCCAGCTCACTGGAAACCATCCGTCACATGGTGGCTTCCGGCCTTGGCGTATCGATCTTGCCGCTGTCGGCAGTGCACAGCCACCACTATGCCCCCGGCGTCATCGAAGTGCGCCCGTTGACGGCACCGGCACCGTTCCGCACGGTAGCCATCGCCTGGCGCGCCAGCTTCCCGCGGCCAAAG  >  NC_002947/6056437‑6056728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑