| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 565,987 | C→A | 9.7% | intergenic (+27/‑137) | katA → / → bfr‑I | catalase/bacterioferritin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 565,987 | 0 | C | A | 9.7% | 178.1 / 9.5 | 62 | intergenic (+27/‑137) | katA/bfr‑I | catalase/bacterioferritin |
| Reads supporting (aligned to +/- strand): ref base C (29/27); new base A (2/4); total (31/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.71e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.75e-01 | |||||||||||
ACCATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAGGC > NC_002947/565847‑566132 | aCCATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCAttt > 8:87357/1‑145 (MQ=255)aCCATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCAttt < 7:87357/145‑1 (MQ=255) ccATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGc < 8:127045/148‑1 (MQ=255) cATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCgg > 1:189057/1‑149 (MQ=255) aTGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGt > 3:254109/1‑149 (MQ=255) gcgggcgTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGtttt > 7:183806/1‑149 (MQ=255) cgggcgTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGttttt < 8:183806/149‑1 (MQ=255) cgggcgTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCAAATGAGGGCGGttctt < 5:62570/149‑1 (MQ=255) gggcgTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTc < 1:233002/149‑1 (MQ=255) ggcgTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAAAACCGCCCAAATGAGGGCGGttcttct < 5:225395/149‑2 (MQ=255) aTGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCact > 2:216581/1‑148 (MQ=255) tCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCactact < 4:13370/148‑1 (MQ=255) tCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTg > 4:123353/1‑149 (MQ=255) cATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGt > 7:181344/1‑149 (MQ=255) cTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAAc > 5:237672/1‑141 (MQ=255) cTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAAc < 6:237672/141‑1 (MQ=255) gTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCg > 2:37769/1‑148 (MQ=255) cttcttCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCt > 8:250049/1‑148 (MQ=255) cttcttCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTg < 1:37769/149‑1 (MQ=255) cAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGAtt < 8:181344/146‑1 (MQ=255) cAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTgc < 4:254109/148‑1 (MQ=255) aGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTCCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGcgcg > 5:166562/1‑149 (MQ=255) ggATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGtttt > 3:18283/1‑149 (MQ=255) gATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTCCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGttttt < 6:166562/149‑1 (MQ=255) tCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTgc < 8:121840/139‑1 (MQ=255) tCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCa < 1:216581/149‑1 (MQ=255) tCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATAACTACTGTTTAACCGATTTTTTGCGTCTGATTgc > 7:121840/1‑139 (MQ=255) ggCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGt > 5:47970/1‑148 (MQ=255) gCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCACCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGa < 2:36247/149‑1 (MQ=255) aCGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCa < 7:250049/148‑1 (MQ=255) aaGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTgcgc > 2:265802/1‑127 (MQ=255) ggATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCAAAGACAAAAg > 8:231550/1‑149 (MQ=255) gATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGc > 8:250871/1‑149 (MQ=255) gATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGc < 2:189057/149‑1 (MQ=255) ttGCATAGGCTTTGGGAATGAATCTCGACTAAGTCGAAGTGATAATAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCt < 7:186468/148‑1 (MQ=255) aaaGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGtt > 1:205543/1‑148 (MQ=255) aaGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTca < 6:47970/149‑1 (MQ=255) ggCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCAAAGACAAAAGCTGGTTCACACTAtgtg < 7:231550/149‑1 (MQ=255) cATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGCTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTgg > 3:218944/1‑148 (MQ=255) cAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTgt > 1:102435/1‑113 (MQ=255) cAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTgt < 2:102435/114‑2 (MQ=255) cAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTcaca > 6:213583/1‑137 (MQ=255) cAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTcaca < 5:213583/137‑1 (MQ=255) tctcGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGa < 2:120796/111‑1 (MQ=255) gCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGttt > 1:84635/1‑149 (MQ=255) aGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTcaca > 8:182452/1‑149 (MQ=255) gAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTAtg < 5:125282/126‑1 (MQ=255) gAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTAtg > 6:125282/1‑126 (MQ=255) aTAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAAt > 4:58250/1‑147 (MQ=255) tgaaaaaCCGCCCAAATGAGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCa > 2:39064/2‑85 (MQ=37) tgaaaaaCCGCCCAAATGAGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCa < 1:39064/84‑1 (MQ=37) agaagaACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAgtg > 8:176215/1‑147 (MQ=255) agaagaACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAggg < 7:7343/149‑1 (MQ=255) gaagaaCCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTGTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGc > 6:134464/1‑149 (MQ=255) aaaaCCGCCCAAATGAGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCa > 7:224831/3‑82 (MQ=38) aaaaCCGCCCAAATGAGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCa < 8:224831/80‑1 (MQ=38) cGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTATTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCaa < 5:134464/149‑1 (MQ=255) gCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAg < 4:18283/149‑1 (MQ=255) gCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAg < 7:182452/149‑1 (MQ=255) cccTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAgg < 2:205543/149‑1 (MQ=255) ccTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAGGc > 1:39101/1‑149 (MQ=255) ccTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAGGc > 5:116109/1‑149 (MQ=255) | ACCATGGCGGGCGTCAGCGAAGATGTCATTCAGCGTCAGCTACAGTACTTCTTCAAGGCGGATCCGGCTTACGGCGAAGGGATTGCAAAGGCTTTGGGCATCAATCTCGCCTAAGTCGAAGTGATAAGAAGAACCGCCCTCATTTGGGCGGTTTTTCAATGAATATCACTACTGTTTAACCGATTTTTTGCGTCTGATTGCGCGTTTTTCAGTGACCATAGACAAAAGCTGGTTCACACTATGTGGCATAGACGTTTTCACATGGAGAATCAGGGCGATGCAAGGC > NC_002947/565847‑566132 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |