Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 584,722 | C→T | 8.1% | L178L (CTG→CTA) | ansA ← | type 1 L‑asparaginase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 584,722 | 0 | C | T | 8.1% | 141.4 / 2.5 | 49 | L178L (CTG→CTA) | ansA | type 1 L‑asparaginase |
Reads supporting (aligned to +/- strand): ref base C (22/23); new base T (2/2); total (24/25) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 |
CACACCGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGTTGTCCCAGGCATCG > NC_002947/584575‑584869 | cacaCCGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgca < 7:119680/149‑1 (MQ=255) acCGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgcagcg > 1:27637/1‑149 (MQ=255) acCGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgcagcg < 2:37929/149‑1 (MQ=255) ccGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgcagcgc > 7:97299/1‑149 (MQ=255) tCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCgcagca > 6:68348/1‑147 (MQ=255) aTCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAgg > 4:55084/1‑148 (MQ=255) tCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCa < 2:12568/149‑1 (MQ=255) aaGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGACTACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATc < 7:196383/149‑1 (MQ=255) aaGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATc < 6:106521/149‑1 (MQ=255) tGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGc > 5:41966/1‑149 (MQ=255) aaaTGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTc < 6:251416/149‑1 (MQ=255) aTGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGc > 3:60445/1‑149 (MQ=255) ccGGCCTGAAGCCCCGGGAATACTGGCAGAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCg > 1:152818/1‑149 (MQ=255) ggCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgcagc > 1:121025/1‑118 (MQ=255) ggCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGgcagc < 2:121025/118‑1 (MQ=255) aaGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTc < 4:60445/148‑1 (MQ=255) aaGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTc < 3:98969/148‑1 (MQ=255) cGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGccc < 8:762/149‑1 (MQ=255) cTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGcc < 5:79058/148‑1 (MQ=255) tGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCAt > 5:94466/1‑149 (MQ=255) gCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGcc > 6:184529/1‑145 (MQ=255) gCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGcc < 5:184529/145‑1 (MQ=255) gCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATg > 2:19618/1‑148 (MQ=255) acaACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGCCGCCAGACAGCCATgcag > 1:252546/1‑149 (MQ=255) acaACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgcag < 6:104279/149‑1 (MQ=255) acaACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgcag < 3:55084/149‑1 (MQ=255) aaCCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTCGGGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgcag > 1:195186/1‑148 (MQ=255) aaCCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgcag > 6:161189/1‑147 (MQ=255) aCCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGcagcag < 8:97299/149‑1 (MQ=255) ccGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCagcagc < 2:152818/149‑1 (MQ=255) aGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGccc > 6:228085/1‑149 (MQ=255) ttGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTg < 2:195186/149‑1 (MQ=255) aCCGGCTTGCGCGGCTGCTTGTAGCCCAGTTTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgc > 1:24869/1‑133 (MQ=255) aCCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATgc < 2:24869/132‑1 (MQ=255) aCCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGaa < 1:19618/149‑1 (MQ=255) aCCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGaa < 6:212451/149‑1 (MQ=255) ggCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTa > 7:74957/1‑149 (MQ=255) gCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTAc < 2:27637/149‑1 (MQ=255) ttGCGCTGCTTCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGTAGCGCAGCAAAGGCATCGAACGCTTCg < 2:74803/96‑1 (MQ=255) ttGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGTAGCGCAGCAAAGGCATCGAACGCTTCg > 3:141787/1‑96 (MQ=255) ttGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGTAGCGCAGCAAAGGCATCGAACGCTTCg < 4:141787/96‑1 (MQ=255) ttGAGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGTAGCGCAGCAAAGGCATCGAACGCTTCg > 1:74803/1‑96 (MQ=255) gcgcGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAg < 8:119422/147‑1 (MQ=255) tAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTc > 2:36143/1‑149 (MQ=255) cAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTgg > 3:261356/1‑121 (MQ=255) cAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTgg < 4:261356/121‑1 (MQ=255) aG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGcc > 3:37085/1‑149 (MQ=255) cAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGTGCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCg < 1:81153/149‑1 (MQ=255) aGGGATCGTATCGGCCCGCTCAGCGTCATGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCACGCAGCAGCTGCCCGTgg > 1:153115/1‑112 (MQ=255) aGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCACGCAGCAGCTGCCCGTgg < 2:153115/112‑1 (MQ=255) ggATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGcc > 3:129025/1‑105 (MQ=255) ggATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGcc < 4:129025/105‑1 (MQ=255) tCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGtt > 1:79801/1‑149 (MQ=255) cGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGTTGTc > 7:176094/1‑149 (MQ=255) cGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGTTGTc > 2:11239/1‑149 (MQ=255) gtggcAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCaa > 6:116050/1‑124 (MQ=255) gtggcAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCaa < 5:116050/124‑1 (MQ=255) gcagcgcagcAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGTTGTCCCAGGCATCg < 1:11239/149‑1 (MQ=255) | CACACCGCTGTCTATCAAGGCCTGCAAATGCCCGGCCTGAAGCCCCGGGAATACTGGCACAACCGCCAGGTTGACCGGCTTGCGCGGCTGCTTGTAGCCCAG‑TTC‑GGCAGGGATCGTATCGGCCCGCTCAGCGTCACGGTGGCGTGGCAGCGCAGCAAAGGCATCGAACGCTTCGCTGCGTAGCTTCGACGCCCGACAGCCATGCAGCAGCTGCCCGTGGAAGTACAGCTGCACGCCATCTTCCAGGCCGTGTTCGAACTGGCGCAATGCGCCGCACAGGTTGTCCCAGGCATCG > NC_002947/584575‑584869 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |