Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 615,569 | T→C | 8.0% | intergenic (‑84/+82) | xseB ← / ← ribB | exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 615,569 | 0 | T | C | 8.0% | 139.9 / 2.7 | 50 | intergenic (‑84/+82) | xseB/ribB | exodeoxyribonuclease 7 small subunit/3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
Reads supporting (aligned to +/- strand): ref base T (24/22); new base C (2/2); total (26/24) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.00e-01 |
GACCAGTGCTTGCAGGTCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGATGGT > NC_002947/615423‑615713 | gACCAGTGCTGGCAGGTCTGCGAGGGATTGCTCGACATCGAGGGCGGCGTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGa < 8:246581/149‑1 (MQ=255) cAGTGCTTGCAGGTCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATg > 7:252600/1‑148 (MQ=255) gTGCTTGCAGGTCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATg > 6:82246/1‑146 (MQ=255) gCTTGCAGGTCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCAGCCGATGCAgc < 4:232954/148‑2 (MQ=255) aGGTCTGCGAGGGATTGCGCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATgg < 6:22962/149‑1 (MQ=255) tCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCTGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATggag > 1:147341/1‑148 (MQ=255) cTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGCGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCt > 4:217286/1‑130 (MQ=255) gAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCgg < 5:82246/149‑1 (MQ=255) gATTGCTCGAAATCGAGGGAGGGTTTTTTGCGGGCCAGGGCGACTGGCTCGGTGGCATTCAGACCGGCGCGACACTAGCAGAGCGGGGCGGGGGGTGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCt < 5:268409/149‑1 (MQ=255) aTCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGTAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGaaa < 2:76599/149‑1 (MQ=255) gagggaggCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAgg < 8:252600/148‑1 (MQ=255) agggaggCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGATGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGc > 1:25943/1‑149 (MQ=255) gCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCg > 3:240365/1‑149 (MQ=255) ttttttGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGca > 1:2914/1‑149 (MQ=255) ttttttGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGca > 6:212940/1‑149 (MQ=255) ttttGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGca < 8:1969/147‑1 (MQ=255) cGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGa < 5:212940/148‑1 (MQ=255) gggCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGAcc > 6:236697/1‑149 (MQ=255) ccATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGc > 7:73923/1‑148 (MQ=255) aTGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGCGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCaaa < 2:2914/149‑1 (MQ=255) tGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTTTCGCGACACAGGGCCGCt < 6:109382/116‑1 (MQ=38) tGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTTTCGCGACACAGGGCCGCt > 5:109382/1‑116 (MQ=38) cATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGAt > 1:119610/1‑149 (MQ=255) aGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGc > 1:81434/1‑149 (MQ=255) gACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGtt < 6:20393/126‑1 (MQ=255) gACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGtt > 5:20393/1‑126 (MQ=255) cTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTccc < 5:219197/149‑1 (MQ=255) tAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGACAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCg > 8:83128/1‑149 (MQ=255) gCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGtt > 6:124939/1‑149 (MQ=255) gcggggctggGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGc < 2:147341/149‑1 (MQ=255) cggggGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGcc < 5:124939/149‑1 (MQ=255) gggAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCAc < 8:73923/149‑1 (MQ=255) gggAGCAAACTTCCGACAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCAc < 7:83128/149‑1 (MQ=255) gCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTccc < 4:54653/96‑1 (MQ=255) gCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTccc > 3:54653/1‑96 (MQ=255) aaaCTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTAcc > 3:208675/1‑149 (MQ=255) aaaCTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTAcc > 5:232664/1‑149 (MQ=255) ttCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCgcgc > 5:233939/1‑149 (MQ=255) ttCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCgcgc > 2:189881/1‑149 (MQ=255) tcTGCATCAGCCGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGctccg > 2:53195/2‑148 (MQ=255) gCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCgcgc < 3:129785/138‑1 (MQ=255) gCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGa > 1:125677/1‑149 (MQ=255) gCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGCCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCgcgc > 4:129785/1‑138 (MQ=255) gCATCAGCCGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGc < 7:232506/142‑1 (MQ=255) gCATCAGCCGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGc > 8:232506/1‑142 (MQ=255) cATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGAt < 2:25943/149‑1 (MQ=255) cATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGAt < 5:236697/149‑1 (MQ=255) ggCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGATGGt < 2:119610/148‑1 (MQ=255) ggCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGATGGt > 1:179934/1‑148 (MQ=255) gCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCAtt < 6:161944/115‑1 (MQ=255) gCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCAtt > 5:161944/1‑115 (MQ=255) | GACCAGTGCTTGCAGGTCTGCGAGGGATTGCTCGAAATCGAGGGAGGCTTTTTTGCGGGCCATGGCGACTGTCTCGGTGGCATTCAGAACGGCGCGACACTAGCAGAGCGGGGCGGGGGGAGCAAACTTCCGGCAGCTGCATCGGCTGATGCAGACCGATGGAGGAGCGGCCCTGTGTCGCGAAAGGGCCGCTCGCACAAGGACCGCAAAGCGTCCCGGTTCGGTGGATCAGGCCGGCTCTGCCTCCCGTTCCAGCATTGCCTCACGGTACCGCGCCAGCTCCTCGATGGT > NC_002947/615423‑615713 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |