Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 744,240 | A→G | 7.1% | D32D (GAT→GAC) | PP_0636 ← | cold shock DNA‑binding domain‑containing protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 744,240 | 0 | A | G | 7.1% | 162.9 / 2.0 | 57 | D32D (GAT→GAC) | PP_0636 | cold shock DNA‑binding domain‑containing protein |
Reads supporting (aligned to +/- strand): ref base A (25/27); new base G (2/2); total (27/30) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTAGCCTGGAGGCGGTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATCCCAGG > NC_002947/744092‑744377 | cGTAGCCTGGAGGCGGTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCca > 5:189509/1‑149 (MQ=255) tAGCCTGGAGGCGGTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCcatc < 7:48024/149‑1 (MQ=255) ccTGGAGGCGGTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCatcatc < 3:140590/149‑1 (MQ=255) ggTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGAt < 6:42487/149‑1 (MQ=255) gggCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGaa < 7:63449/149‑1 (MQ=255) ggCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGaa < 2:17035/148‑1 (MQ=255) gcgcTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGc > 1:33480/1‑149 (MQ=255) cccTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAAcc > 5:198623/1‑149 (MQ=255) gTTTGACCTTCACTTCTCTGTATCCTTTCGGACCCGTCTTCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCGTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTtc < 3:175423/149‑1 (MQ=255) gACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAg > 3:162466/1‑149 (MQ=255) tcTTCACTGCTCTGTATACTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAgg < 6:189509/147‑1 (MQ=255) ccTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAgg < 7:159932/148‑1 (MQ=255) aCTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATATCCTTGGATGAAGCCAAACCCCTTCTCAGGCATg > 4:187064/1‑147 (MQ=255) tGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTgcg > 3:101049/1‑148 (MQ=255) tGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTgcg > 7:210217/1‑148 (MQ=255) tGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTgc < 6:198623/147‑1 (MQ=255) aTCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAAc < 7:116394/122‑1 (MQ=255) aTCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAAc > 8:116394/1‑122 (MQ=255) tCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAAAACCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCacga > 5:132269/1‑149 (MQ=255) tCCTATCGCACCCGGCCGCCAATCAAATGCTACTGACTGCCCATCGAACAGCTATCCTCCCTCTACGATTTTCATGTGGAAAAAAAAGCTCCTTCCATCCACTCCTAGGATGAAGCCAAACCCCTAATCAGCCAAGAA‑TCTGCGCaaga > 8:246774/1‑149 (MQ=255) tttCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCGTCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGc > 7:64695/1‑149 (MQ=255) tttCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCGTCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCACGAA‑GCTGCGCacgacg > 7:127790/1‑148 (MQ=255) gACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCtgag < 4:162466/149‑1 (MQ=255) ccGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCAt < 3:179909/124‑1 (MQ=255) ccGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCAt > 4:179909/1‑124 (MQ=255) gccggccTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCtgaggtgagg < 7:246774/144‑1 (MQ=255) gCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCGTCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCtgaggtgagg < 8:64695/149‑1 (MQ=255) gCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCGTCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCACGAA‑GCTGCGCACGACGCCtgaggtgagg < 8:127790/149‑1 (MQ=255) ccTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATc > 3:128899/1‑149 (MQ=255) cAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTc < 3:187064/148‑1 (MQ=255) aaTGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGCCGCCTGAGGTGAGGGTATCTTCCt > 2:115781/1‑148 (MQ=255) cTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCt < 1:117422/149‑1 (MQ=255) cTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCt > 2:209813/1‑149 (MQ=255) cTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCt > 5:207961/1‑149 (MQ=255) tACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTg > 3:242751/1‑149 (MQ=255) ctgactgCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTg < 2:215125/147‑1 (MQ=255) tgactgCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGtt > 3:17935/1‑149 (MQ=255) gactgCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCTGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGttt > 1:221519/1‑149 (MQ=255) cccATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCg < 1:209813/148‑1 (MQ=255) cccATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGc < 2:33480/149‑1 (MQ=255) aTCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTc > 5:147877/1‑129 (MQ=255) aTCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTc < 6:147877/129‑1 (MQ=255) tcctccCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACctgct < 2:221519/147‑1 (MQ=255) ctccctcTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAggg < 5:237483/108‑1 (MQ=255) ctccctcTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAggg > 6:237483/1‑108 (MQ=255) ctctACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCtttt > 5:243788/1‑149 (MQ=255) tctACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATc < 1:223619/116‑1 (MQ=255) tctACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATc > 2:223619/1‑116 (MQ=255) cttagTTTTTGATGTGTACAAAATAGCTGCGTCCTTCATCTCCTTGGATGAAGCCAAAGCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCttttt < 4:17935/144‑1 (MQ=255) ctACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTg > 1:112739/1‑149 (MQ=255) cGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTg < 2:112739/146‑1 (MQ=255) gTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAg < 6:207961/149‑1 (MQ=255) tttttGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTAGAAgg < 2:229151/149‑1 (MQ=255) ttgccAAAATTGCTGCGGTCATGATACCCTTGGAAGAAGCCATAACCCTTCTCCCGCATGAACGTGGCGCA‑GTCGCCGGCGGTGTGGGTATCTTCCTGATCTGGTTTGTCGGTGATTAACCTTCTTTCCTTTTTGGAAGGCAGCCa < 6:132269/142‑1 (MQ=255) aaaaTAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATcc > 3:91596/1‑149 (MQ=255) aaTAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATcc > 3:217803/1‑147 (MQ=255) tAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATCCCAgg < 4:242751/149‑1 (MQ=255) tAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATCCCAgg < 4:128899/149‑1 (MQ=255) tGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTg > 3:196056/1‑122 (MQ=255) tGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTg < 4:196056/122‑1 (MQ=255) | CGTAGCCTGGAGGCGGTGGGCGCTCCCCTGGTTTGACCTTCACTGCTCTGTATCCTTTCGGACCCGGCTGCCCTTCAAATGCTACTGACTGCCCATCGAACAGCTCTCCTCCCTCTACGTTTTTGATGTGGACAAAATAGCTGCGTCCATCATCTCCTTGGATGAAGCCAAACCCCTTCTCAGGCATGAA‑GCTGCGCACGACGCCTGAGGTGAGGGTATCTTCCTGATCTGGTTTCTCGCTCATGAACCTGCTGTCCTTTTTGGAAGGCAGCCATGGTATCCCAGG > NC_002947/744092‑744377 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |