Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 948,148 C→T 9.2% L209L (CTG→TTG)  hmp → flavohemoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947948,1480CT 9.2% 147.9 / 5.0 54L209L (CTG→TTG) hmpflavohemoprotein
Reads supporting (aligned to +/- strand):  ref base C (22/27);  new base T (2/3);  total (24/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.62e-01

GTACGCCGCGAGCAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGCAGCCAG  >  NC_002947/948004‑948296
                                                                                                                                                |                                                                                                                                                       
gTACGCCGCGAGCAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGt                                                                                                                                                      <  8:142782/148‑1 (MQ=255)
      cgcgAGCAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCTTGCCGtcgca                                                                                                                                               >  5:218231/1‑148 (MQ=255)
            cAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCtgt                                                                                                                                             <  6:22737/145‑1 (MQ=255)
            cAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCtgt                                                                                                                                             >  5:22737/1‑145 (MQ=255)
              ggAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACg                                                                                                                                    >  5:3218/1‑149 (MQ=255)
               gAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCtgt                                                                                                                                             <  2:68793/142‑1 (MQ=255)
               gAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCtgt                                                                                                                                             >  1:68793/1‑142 (MQ=255)
                   gcagcGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAg                                                                                                                               <  7:111048/149‑1 (MQ=255)
                         agaTCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATAc                                                                                                                         <  1:139047/149‑1 (MQ=255)
                          gaTCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATAcc                                                                                                                        >  2:53271/1‑149 (MQ=255)
                          gaTCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATAcc                                                                                                                        <  6:3218/149‑1 (MQ=255)
                           aTCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCg                                                                                                                       >  3:212619/1‑149 (MQ=255)
                           aTCGTTTCGTTCTACTTCGCCCCGGTGGAGGTCATGCCGGTTCTCAAGGCAGAACCTGGCCAGTACATAGGTCTGAAACTGGACATTGACGTTGCCGAGCAGCGCCGCAACTATTCCTTGCCGTCGCACAGCG‑‑‑CCGACAGGGAATagtt                                                                                                                       <  7:73054/149‑4 (MQ=25)
                              gtttcgttCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCTTGCCGTCGCACAGCG‑‑‑CCGACAGGGAATagttgcg                                                                                                                    <  6:218231/149‑7 (MQ=37)
                               tttcgttCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCAt                                                                                                                    >  7:124619/1‑148 (MQ=255)
                               tttcgttCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATc                                                                                                                   <  8:124619/149‑1 (MQ=255)
                               tttcgttCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATc                                                                                                                   <  8:242839/149‑1 (MQ=255)
                               tttcggtCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCAt                                                                                                                    >  7:242839/1‑148 (MQ=255)
                                   gttCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGc                                                                                                                <  7:26595/148‑1 (MQ=255)
                                              ccccGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAg                                                                                                    <  1:53271/149‑1 (MQ=255)
                                               cccGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAgg                                                                                                   >  6:94227/1‑149 (MQ=255)
                                                 cGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAggcg                                                                                                 <  1:123420/149‑1 (MQ=255)
                                                          gCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAg                                                                                        <  1:259150/149‑1 (MQ=255)
                                                             tGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtc                                                                                     <  5:128065/149‑1 (MQ=255)
                                                                cGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtctc                                                                                   >  3:46470/1‑148 (MQ=255)
                                                                cGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtctc                                                                                   <  4:46470/148‑1 (MQ=255)
                                                                cGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtctc                                                                                   >  7:121640/1‑148 (MQ=255)
                                                                cGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTcc                                                                                  <  1:75423/149‑1 (MQ=255)
                                                                 ggTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTcc                                                                                  >  8:53074/1‑148 (MQ=255)
                                                                  gTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCaa                                                                                >  2:90242/1‑149 (MQ=255)
                                                                           gCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCa                                                                       <  8:121640/149‑1 (MQ=255)
                                                                               aaCCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGAt                                                                   <  7:53074/149‑1 (MQ=255)
                                                                                 ccTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGc                                                                                                                >  5:190554/1‑102 (MQ=255)
                                                                                 ccTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGc                                                                                                                <  6:190554/102‑1 (MQ=255)
                                                                                       cAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCTTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAggcgggc                                                                                              >  3:67532/1‑114 (MQ=255)
                                                                                       cAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCTTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAggcgggc                                                                                              <  4:67532/114‑1 (MQ=255)
                                                                                        aGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAg                                                          <  5:182094/149‑1 (MQ=255)
                                                                                        aGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAg                                                          <  4:212619/149‑1 (MQ=255)
                                                                                             aTCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTggg                                                     >  2:17470/1‑149 (MQ=255)
                                                                                             aTCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTggg                                                     <  1:17470/149‑1 (MQ=255)
                                                                                              tCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGc                                                    >  1:46364/1‑149 (MQ=255)
                                                                                                 gTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGa                                                  >  7:69543/1‑148 (MQ=255)
                                                                                                  tcagAAACTGGACATTGACGGTGCCGAGCACCGCCGCAACTATTCACTGTCGGCGCAGTGCG‑‑‑AGGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGAGGGCGaga                                                >  4:43988/4‑147 (MQ=255)
                                                                                                    tGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATa                                                                                                                          >  5:194102/1‑73 (MQ=255)
                                                                                                    tGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATa                                                                                                                          <  6:194102/73‑1 (MQ=255)
                                                                                                       aaCTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtctc                                                                                   <  4:77048/109‑1 (MQ=255)
                                                                                                       aaCTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGtctc                                                                                   >  3:77048/1‑109 (MQ=255)
                                                                                                            gACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACt                                      >  5:41987/1‑149 (MQ=255)
                                                                                                                    cGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCGGTGCGCCTTCTGCATGGAATACCGCTTCAGCGTCATGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTcc                                 <  1:90242/149‑1 (MQ=255)
                                                                                                                            agcagcGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGt                      <  6:41987/149‑1 (MQ=255)
                                                                                                                                 cgccgcAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGTCCGGCAACGTCTCCAACTACCTGCACGATGAGCTGAACCTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTCACtt                 >  4:246061/1‑149 (MQ=255)
                                                                                                                                     gcAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCAcc             >  6:214751/1‑149 (MQ=255)
                                                                                                                                         cTATTCCCTGGCGGCGGTGGGCT‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGGGCGAGGCGGGCGGCAAGGCCTCCAACTACCGGCCCGAGTAGCTGTCGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTgg         <  1:202512/149‑1 (MQ=255)
                                                                                                                                            ttCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACGTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGcag      <  3:246061/149‑1 (MQ=255)
                                                                                                                                              cccTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGcagcc    >  6:268480/1‑149 (MQ=255)
                                                                                                                                               ccTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGcagc     >  5:192824/1‑147 (MQ=255)
                                                                                                                                                cTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATAAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGcagccag  >  1:123834/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                       
GTACGCCGCGAGCAGGAAAGCAGCGAGATCGTTTCGTTCTACTTCGCCCCGGTGGATGGCATGCCGGTGCTCAAGGCAGAACCTGGCCAGTACATCGGTCTGAAACTGGACATTGACGGTGCCGAGCAGCGCCGCAACTATTCCCTGTCGGCGCTGTGCG‑‑‑ACGGCAAGGAATACCGCATCAGCGTCAAGCGCGAGGCGGGCGGCAAGGTCTCCAACTACCTGCACGATGAGCTGAAGGTGGGCGATACCCTGCAACTGTTCCCGCCTGCGGGTGACTTCACCCTGGCAGCCAG  >  NC_002947/948004‑948296

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: