Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,025,788 C→A 7.1% A394S (GCG→TCG)  dppA‑II ← dipeptide ABC transporter substrate‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,025,7880CA 7.1% 175.1 / 4.0 56A394S (GCG→TCG) dppA‑IIdipeptide ABC transporter substrate‑binding protein
Reads supporting (aligned to +/- strand):  ref base C (27/25);  new base A (2/2);  total (29/27)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.39e-01

GGTACCCAGCCAGTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGCGCGTACGGGGCGTCCTTGA  >  NC_002947/1025642‑1025934
                                                                                                                                                    |                                                                                                                                                   
ggTACCCAGCCAGTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCt                                                                                                                                                   <  5:94328/149‑1 (MQ=255)
    cccAGCCTGTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGa                                                                                                                                                <  1:123783/148‑1 (MQ=255)
     ccagccagTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCTATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGGCGGACTGGAGc                                                                                                                                              <  3:131743/149‑1 (MQ=255)
      cagccagTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCa                                                                                                                                             >  2:111599/1‑149 (MQ=255)
          cagTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTc                                                                                                                                         <  3:241273/149‑1 (MQ=255)
            gTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCgg                                                                                                                                       <  1:111599/149‑1 (MQ=255)
                tCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCAATTCGTAGAGGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGACCGCCTGGAGCATTTCGGcct                                                                                                                                    >  2:221678/1‑147 (MQ=255)
                      tCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCtt                                                                                                                             <  3:12685/149‑1 (MQ=255)
                      tCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCtt                                                                                                                             <  2:33482/149‑1 (MQ=255)
                          cGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCa                                                                                                                         <  2:119436/149‑1 (MQ=255)
                          cGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCa                                                                                                                         <  2:123588/149‑1 (MQ=255)
                                         aGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCATGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACggg                                                                                                         >  7:43640/1‑149 (MQ=255)
                                                  gggCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCAcc                                                                                                >  4:109603/1‑149 (MQ=255)
                                                   ggCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCg                                                                                               >  7:158064/1‑149 (MQ=255)
                                                             tGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCca                                                                                     <  7:208973/149‑1 (MQ=255)
                                                                 cACCGTTTTTCATTCGGTTTTGGTATTTGCCCCATTCGTTGCTGACGTTGCTATATCCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCcaca                                                                                   <  1:221678/149‑1 (MQ=21)
                                                                  aCCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAgg                                                                                 <  8:158064/148‑1 (MQ=255)
                                                                  aCCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCACACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGtt                                                                                                     >  8:163312/1‑128 (MQ=255)
                                                                  aCCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCACACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGtt                                                                                                     <  7:163312/128‑1 (MQ=255)
                                                                      tttttCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGAt                                                                            >  5:124767/1‑149 (MQ=255)
                                                                              gcgcTTGAGGTATTCGCTCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGTCCCACAGGGTGATCTCGGTGc                                                                    >  5:198933/1‑149 (MQ=255)
                                                                              gcgcTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGc                                                                    >  8:200626/1‑149 (MQ=255)
                                                                                 cTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAg                                                                 >  5:93675/1‑149 (MQ=255)
                                                                                   tGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAg                                                                 <  3:185576/147‑1 (MQ=255)
                                                                                   tGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAg                                                                 >  4:185576/1‑147 (MQ=255)
                                                                                       gTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGa                                                           >  2:131168/1‑149 (MQ=255)
                                                                                              ccccATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGc                                                    <  1:131168/149‑1 (MQ=255)
                                                                                                ccATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCct                                                  >  3:243545/1‑149 (MQ=255)
                                                                                                  aTTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCctgc                                                <  6:124767/149‑1 (MQ=255)
                                                                                                  aTTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCctgc                                                <  5:89718/149‑1 (MQ=255)
                                                                                                     cGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCctgctg                                              >  1:239348/1‑148 (MQ=255)
                                                                                                      gTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGa                                            >  2:102862/1‑149 (MQ=255)
                                                                                                          cTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAg                                        <  6:93675/149‑1 (MQ=255)
                                                                                                          cTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGAAACCCGCATGAAGGATAAg                                        >  8:30/1‑149 (MQ=25)
                                                                                                           tGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAg                                        >  8:23974/1‑148 (MQ=255)
                                                                                                             aCGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAg                                        <  7:23974/146‑1 (MQ=255)
                                                                                                             aCGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCt                                      <  3:109603/148‑1 (MQ=255)
                                                                                                             aCGATGAGCACCTTCAATCCGAGCTTGCTCGAGTCCGCCTGGAGCTTTTCGGCCATCAGGTTGGCATTGGGGTTGTACGCGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGTTGCCAGGTTTGACACGCGCCTGCTGGTTCAGCt                                      <  2:150720/148‑1 (MQ=25)
                                                                                                                 tGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTg                                 <  7:200626/149‑1 (MQ=255)
                                                                                                                          cTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCtttt                          >  2:243649/1‑149 (MQ=255)
                                                                                                                           ttGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTc                         >  6:44372/1‑149 (MQ=255)
                                                                                                                                   gAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATc                                          <  3:259477/124‑1 (MQ=255)
                                                                                                                                   gAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATc                                          >  4:259477/1‑124 (MQ=255)
                                                                                                                                   gAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGcgcg                  >  7:103743/1‑148 (MQ=255)
                                                                                                                                   cgaaatGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGcgcg                  >  4:103598/6‑148 (MQ=255)
                                                                                                                                   cgaaatGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGcgcg                  >  4:99635/6‑148 (MQ=255)
                                                                                                                                   cgaaatGCTCCAGGCGGACTGGAGCATTTCGGCCATCAGCTTGGCATTTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGATGGATCAGCTGTCTGGCCTTTTCCGGcgcg                  >  1:198556/6‑149 (MQ=21)
                                                                                                                                        tGCTCCAGGCGGACTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCa                                         >  1:248807/1‑120 (MQ=255)
                                                                                                                                        tGCTCCAGGCGGACTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCa                                         <  2:248807/120‑1 (MQ=255)
                                                                                                                                           tCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGCGCGTACGGGGCg         >  3:220752/1‑149 (MQ=255)
                                                                                                                                           tCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGCGCGTACGGGGCg         >  4:227051/1‑149 (MQ=255)
                                                                                                                                            ccAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCctgctg                                              >  4:100321/1‑111 (MQ=255)
                                                                                                                                            ccAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCctgctg                                              <  3:100321/111‑1 (MQ=255)
                                                                                                                                              aGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACAccc                                                      <  5:109054/101‑1 (MQ=255)
                                                                                                                                              aGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACAccc                                                      >  6:109054/1‑101 (MQ=255)
                                                                                                                                                  cGCCTGGAGCATTTCGGCCTTCAGCTTGGCATTGGGGTTGTACGTGCTTTGCAGCGTCATGGGCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGCATCAGCTGTCTGGCCTTTTCCGGGGCGTACGGGGCGTCCTTgt  <  6:198933/149‑2 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
GGTACCCAGCCAGTTGTCCGGGTCGCCGTTGTCACCGGTCCAGCCGATCAGGGCGATGTCGTGCTCACCGTTTTTCATGCGCTTGAGGTATTCGCCCCATTCGTAGCTGACGATGCGCACCTTGAATCCGAGCTTGCTCCAGTCCGCCTGGAGCATTTCGGCCATCAGCTTGGCATTGGGGTTGTACGGGCGTTGCACCGGCATGGCCCACAGGGTGATCTCGGTGCCAGGTTTGACACCCGCCTGCTGGATCAGCTGTCTGGCCTTTTCCGGCGCGTACGGGGCGTCCTTGA  >  NC_002947/1025642‑1025934

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: