Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,071,037 | G→C | 10.6% | L117V (CTG→GTG) | PP_0928 ← | K+‑dependent Na+/Ca+ exchanger‑like protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,071,037 | 0 | G | C | 10.6% | 127.9 / 5.2 | 46 | L117V (CTG→GTG) | PP_0928 | K+‑dependent Na+/Ca+ exchanger‑like protein |
Reads supporting (aligned to +/- strand): ref base G (18/23); new base C (2/3); total (20/26) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.37e-01 |
AGCGTACCTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAGATGTTGCTG > NC_002947/1070892‑1071182 | agcGTACCTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGCGCCGGGGAGGGGCGTGCGTAATGGCGCGCCTGCTGCCAGAGCAGTGCCAGGTCACCGGCCAGCCCCAGCCATAGCAGGGCCCCTTCACCCCTGCCCAgggc > 5:54712/1‑147 (MQ=255) tACCTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCACCTGGGCa < 7:20659/149‑1 (MQ=255) aCCTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCAt > 1:187361/1‑149 (MQ=255) cTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTg > 6:193071/1‑149 (MQ=255) cTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCACCTGGGCaggg < 2:220068/149‑4 (MQ=255) cAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCGGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCTGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCACCCCTGCCCAGGTGGGCATTGGCGGa < 6:54712/149‑1 (MQ=255) aaGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAg < 8:184900/149‑1 (MQ=255) aaGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAg < 5:193071/149‑1 (MQ=255) cgcCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAgcgc < 2:187361/149‑1 (MQ=255) cccGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCAt < 5:33658/149‑1 (MQ=255) cGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGGCCCAGCAATAGCAGTGCCCCTTCAACCGTGCCCACCTGGGCaggg < 8:132991/134‑4 (MQ=255) cGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCACCTGGGCaggg > 7:132991/1‑131 (MQ=255) cccGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATacac > 7:11939/1‑147 (MQ=255) cgTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAgg < 2:153989/149‑1 (MQ=255) tCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGat > 3:111928/1‑149 (MQ=255) gCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAg > 1:229943/1‑149 (MQ=255) gCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAg < 4:111928/149‑1 (MQ=255) gCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAg < 8:116403/149‑1 (MQ=255) cAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAgg < 3:210731/149‑1 (MQ=255) tgcgtgcgTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTc > 8:13416/1‑148 (MQ=255) gcgtgcgtAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTc > 5:205185/1‑147 (MQ=255) cgtgcgtAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAg < 8:11939/149‑1 (MQ=255) gtgcgtAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGc > 7:139267/1‑149 (MQ=255) tGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCTGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCa > 1:215137/1‑90 (MQ=255) tGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCTGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCa < 2:215137/90‑1 (MQ=255) gagCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCGAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCg > 3:136991/1‑147 (MQ=255) cATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCg > 5:2273/1‑149 (MQ=255) ttGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGc < 4:181796/122‑1 (MQ=255) ttGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGc > 3:181796/1‑122 (MQ=255) ggTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGCGGAATGTCCAGCCGCACCAGATGGCGTGACACCCGCAGCGGgatgat > 2:97619/1‑148 (MQ=255) ccGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTg < 8:87621/124‑1 (MQ=255) ccGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTg > 7:87621/1‑124 (MQ=255) cGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGcgcg > 3:153795/1‑149 (MQ=255) cccAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGcc < 4:153795/149‑1 (MQ=255) ccAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGcc > 6:189610/1‑148 (MQ=255) cAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCga < 6:2273/149‑1 (MQ=255) cAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCga < 2:229943/149‑1 (MQ=255) atcAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCgag < 6:205185/147‑1 (MQ=255) gCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCgaga < 7:145948/149‑1 (MQ=255) aaTAGGAGTGCCACTTCAACCCTGCCCAGGTGGGGATAGGCTGACATCGCAGAGACCAGCCCGCTGGCAAGGATGATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAAt < 8:88910/149‑1 (MQ=255) aGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGAc < 7:252489/149‑1 (MQ=255) gCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGAc < 5:189610/148‑1 (MQ=255) cAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGCCACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGAc > 7:218580/1‑147 (MQ=255) aaCCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAg < 2:148696/148‑1 (MQ=255) ccaatGCCCACCTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCTGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAGa > 1:230461/5‑148 (MQ=255) cccTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAGATg > 3:243468/1‑149 (MQ=255) ccAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAGATGTtgctg < 4:243468/149‑1 (MQ=255) | AGCGTACCTGACCAGAAGCGCCCGGCCCCGGACCTGGCGGCGTCCGGGGCAGGGTAGGTGCGTGCGTAATGGCGCGACTGATGCCAGAGCATTGCCAGGTAACCGGCCAGCCCCAGCAATAGCAGTGCCCCTTCAACCCTGCCCAGGTGGGCATTGGCGGACAGCGCATACACCAGCCCGCTGGCAAGGATCATCAGGGGAATGTCCAGCCGCACCAGCTGGCGTGACACCCGCAGCGGGATGATCAGCGCGGCCAGGCCGAGAATGACCAGTACGTTGAAGATGTTGCTG > NC_002947/1070892‑1071182 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |