| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,241,527 | A→G | 10.8% | intergenic (+19/‑73) | PP_1080 → / → grxD | molybdopterin‑binding oxidoreductase/monothiol glutaredoxin |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,241,527 | 0 | A | G | 10.8% | 96.0 / 3.4 | 37 | intergenic (+19/‑73) | PP_1080/grxD | molybdopterin‑binding oxidoreductase/monothiol glutaredoxin |
| Reads supporting (aligned to +/- strand): ref base A (18/15); new base G (2/2); total (20/17) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.90e-01 | |||||||||||
ACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGCC > NC_002947/1241384‑1241670 | aCCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGgcg > 1:68040/1‑149 (MQ=255) gCCGTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGTGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCGCCGTGCTCGGCcttgc < 8:212207/149‑3 (MQ=255) gCCCTGGCGCAACCCGGCGTGAGTGCCAATGAGCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTc < 4:30641/148‑1 (MQ=255) gcAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATa > 8:215394/1‑145 (MQ=255) gcAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATa < 7:215394/145‑1 (MQ=255) aTGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACt < 5:39377/149‑1 (MQ=255) accGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGa > 8:74543/1‑149 (MQ=255) gcTTTCGGGACCAGGTTTCCGGAACCGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGcc < 1:28854/149‑1 (MQ=255) tttCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGcc > 4:254283/1‑147 (MQ=255) tttCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAAGCCG‑AGCGCCGTGCTCGGCctt < 6:151934/99‑1 (MQ=38) tttCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAAGCCG‑AGCGCCGTGCTCGGCctt > 5:151934/1‑99 (MQ=38) cAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCTGATAGTTCAGCCGAGGTGCTACa < 2:68040/149‑1 (MQ=255) aGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACAt > 1:47811/1‑149 (MQ=255) gTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATg > 5:6082/1‑148 (MQ=255) tttCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGa > 1:268607/1‑149 (MQ=255) ggAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCGTAGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGatat > 1:215541/1‑148 (MQ=255) cgcTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGAt < 5:253684/149‑1 (MQ=255) tCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCa > 8:146212/1‑148 (MQ=255) aaTGGCGTACCCGTGCAGGTCGCGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGa < 2:181707/129‑1 (MQ=255) aaTGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCa > 7:63992/1‑146 (MQ=255) tGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAagag < 3:254283/149‑1 (MQ=255) gCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATCCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAagag > 5:76826/1‑147 (MQ=255) cccGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGAtt < 6:6082/148‑1 (MQ=255) cGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGcc < 2:268607/149‑1 (MQ=255) tGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCcaa < 2:199011/149‑1 (MQ=255) cGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAaga < 1:170362/124‑1 (MQ=255) cGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAaga > 2:170362/1‑124 (MQ=255) gCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGc > 2:43158/1‑149 (MQ=255) aGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTa > 5:198332/1‑148 (MQ=255) aGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTAc < 2:215541/149‑1 (MQ=255) tcggaaagCCG‑AGCGCCGTGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGa > 5:237212/8‑148 (MQ=255) ggCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGaaa < 7:74543/149‑1 (MQ=255) cG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAag > 4:100359/1‑103 (MQ=255) cG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAag < 3:100359/103‑1 (MQ=255) cG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGTCTCGcc > 4:32241/1‑149 (MQ=255) cG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGcc > 3:9879/1‑149 (MQ=255) cG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGcc > 3:228838/1‑149 (MQ=255) | ACCTGCAGATCGCCCTGGCGCAACCCGGCGTGAGTGCCAATGACCTGACCGATGAGCGCTTTCGGGACCAGGTTTCCGGAAACGCTGCGCTCAATGGCGTACCCGTGCAGGTCGAGGCCGCTTGAGGAACGGCAAGGCCG‑AGCACGGCGCTCGGCTTTCCGATACAATGCGACACCGTGCCGACGACTGTGTCGGATAGTTCAGCCGAGGTGCTACATGGATATCATCGAAACGATCAAAGAGCAGATTGCCAACAACACCATTCTGCTTTACATGAAAGGCTCGCC > NC_002947/1241384‑1241670 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |