Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 156,388 | A→G | 10.0% | intergenic (‑13/+30) | ygdQ ← / ← citN | transport protein/citrate transporter |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 156,388 | 0 | A | G | 10.0% | 105.9 / 3.3 | 40 | intergenic (‑13/+30) | ygdQ/citN | transport protein/citrate transporter |
Reads supporting (aligned to +/- strand): ref base A (20/16); new base G (2/2); total (22/18) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 |
CAGAATCGAGATCATGATGATGTTGTCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGCCGAACTC > NC_002947/156247‑156528 | cAGAATCGAGATCATGATGATGTTGTCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGcgcg > 2:42144/1‑149 (MQ=255) aGAATCGAGATCATGATGATGTTGTCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACACAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCTGACCGGGGcgcgt < 4:172228/149‑1 (MQ=255) gatgatgTTGTCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTACCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATAc > 2:13802/1‑149 (MQ=255) tgttgtCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATg > 4:196375/1‑149 (MQ=255) tCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGGCAGGGCGCGTCGCGTACGTGATACGGATGTATTa < 3:96621/149‑1 (MQ=255) tCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTCCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTa < 1:13802/149‑1 (MQ=255) gATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTaaa < 7:249390/149‑1 (MQ=255) cGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGacta > 1:20868/1‑149 (MQ=255) cGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGacta < 2:220500/149‑1 (MQ=255) cGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGa > 8:192980/1‑146 (MQ=255) cGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGa < 7:192980/146‑1 (MQ=255) cGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAAc < 3:187620/149‑1 (MQ=255) gATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGaa > 7:221058/1‑147 (MQ=255) cAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCTGACCGGGGcgcgttg < 8:45702/108‑3 (MQ=255) cAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCTGACCGGGGcgcgttg > 7:45702/1‑106 (MQ=255) cAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCgg > 7:146920/1‑148 (MQ=255) aaGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGAt < 7:91729/117‑1 (MQ=255) aaGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGAt > 8:91729/1‑117 (MQ=255) ggTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCAt > 5:21295/1‑147 (MQ=255) gTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATcag > 3:11628/1‑149 (MQ=255) aaaaGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGt < 2:20868/149‑1 (MQ=255) aaCCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATa > 8:93990/1‑94 (MQ=255) aaCCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATa < 7:93990/94‑1 (MQ=255) ccAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCa > 3:30240/1‑149 (MQ=255) ggCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAgg > 5:9320/1‑149 (MQ=255) ttttCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGa < 1:42144/149‑1 (MQ=255) ccTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAg < 1:265557/131‑1 (MQ=255) ccTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAg > 2:265557/1‑131 (MQ=255) cGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGaa < 6:21295/148‑1 (MQ=255) cGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGaa < 4:11628/148‑1 (MQ=255) aTGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCtgatga > 6:275705/1‑149 (MQ=255) tGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTgatgat > 2:5359/1‑149 (MQ=255) ggCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGcac > 3:228443/1‑105 (MQ=255) ggCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGcac < 4:228443/105‑1 (MQ=255) cgaCGCGCCCTGACCGGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGc > 4:38005/3‑149 (MQ=255) cAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTg > 2:228194/1‑133 (MQ=255) cAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTg < 1:228194/133‑1 (MQ=255) cAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGc > 8:67979/1‑149 (MQ=255) ccccGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGCCGAACTc > 5:116104/1‑149 (MQ=255) ccccGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGCCGAACTc < 8:221058/149‑1 (MQ=255) | CAGAATCGAGATCATGATGATGTTGTCGATACCGAGGACGATCTCAAGCGCGGTAAGGGTGAAAAAGGCAACCCAGATTTCCGGGCTGGTCAGCCATTCCATGTATTTTCCTTCGAGCGGTAATGGCAACGCGCCCCGGTCAGGGCGCGTCGCGTACGTGATACGGATGTATTAAAGACTACTGAACAGCGGGAAAATCCCCATCAGCAGTGCGCCGAGCATTATGCACAGGCATACCAGCACTGCCCACTTGAGCGTGAAGCGCTGATGATCGCCGAACTC > NC_002947/156247‑156528 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |